| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra024412 |
| Family | GT5 |
| Protein Properties | Length: 594 Molecular Weight: 66798.6 Isoelectric Point: 5.878 |
| Chromosome | Chromosome/Scaffold: 06 Start: 15630680 End: 15634294 |
| Description | UDP-Glycosyltransferase superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT5 | 194 | 560 | 0 |
| HVIHICTEMDPLVSVGPLASYITGLSCALQGKGYLVEVILPKYSTLDLDEVEGLREIEADAYSYFNGQLHANRIWNGVVSGVGVTLIQPVYYGSMFSRDK VYGYSDDVDRFAYFSRASLDYIAKSGKQPDVLHIHNWQTAIVGPLFWDVFVNQGLEGTRILLTCQGFDSKASHVASFLFFPLCLVPPEKLELCGLDPASV HRADRLQDNTNPQLVNLLKGGIVYSNKVVIMPSSPSEGRTLHRNSIPGLEPTLAVHKEKLCFAPFGLDNSKWDPSIDVYLPENYSAEDIKGKSICKAELQ RQLGLVEDVSTTIVGCIFSEISGVDLQSLKSLVRRTAKNDVQFVIMMMNEDQMIIKELEKAQDEIEK | |||
| Full Sequence |
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| Protein Sequence Length: 594 Download |
| MQSAANFPLK WNLSPLVSSS KVQLVNLKFR KAHALHCLRS EGHEEKFENS SQDKLGVSSV 60 IKEDKHKDIW SLFREAQQNI LYLNKQRLAA VEELEKLKNE RVELLEKINQ LEEESHIVVK 120 KDKSSILWEL LLRVDSMVLN GLIGTEEASS MRQLVREHQA NISEFPLDVL QQGDAQVLAE 180 LRQLPNRGKR NGLHVIHICT EMDPLVSVGP LASYITGLSC ALQGKGYLVE VILPKYSTLD 240 LDEVEGLREI EADAYSYFNG QLHANRIWNG VVSGVGVTLI QPVYYGSMFS RDKVYGYSDD 300 VDRFAYFSRA SLDYIAKSGK QPDVLHIHNW QTAIVGPLFW DVFVNQGLEG TRILLTCQGF 360 DSKASHVASF LFFPLCLVPP EKLELCGLDP ASVHRADRLQ DNTNPQLVNL LKGGIVYSNK 420 VVIMPSSPSE GRTLHRNSIP GLEPTLAVHK EKLCFAPFGL DNSKWDPSID VYLPENYSAE 480 DIKGKSICKA ELQRQLGLVE DVSTTIVGCI FSEISGVDLQ SLKSLVRRTA KNDVQFVIMM 540 MNEDQMIIKE LEKAQDEIEK KDGRLWELKI MEAMEKDLCC DVHVSAYTSI KNL* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02939 | PLN02939 | 0.0006 | 44 | 112 | 69 | + transferase, transferring glycosyl groups | ||
| PRK00654 | glgA | 3.0e-56 | 193 | 538 | 364 | + glycogen synthase; Provisional | ||
| TIGR02095 | glgA | 5.0e-60 | 193 | 563 | 379 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 3.0e-61 | 194 | 539 | 361 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| PLN02939 | PLN02939 | 4.0e-96 | 53 | 574 | 533 | + transferase, transferring glycosyl groups | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK91459.1 | 0 | 1 | 463 | 1 | 440 | At5g65691/F16M2.160 [Arabidopsis thaliana] |
| GenBank | AAK91459.1 | 0.007 | 513 | 593 | 369 | 460 | At5g65691/F16M2.160 [Arabidopsis thaliana] |
| GenBank | ACD13789.1 | 0 | 31 | 583 | 27 | 583 | starch synthase V precursor [Vitis vinifera] |
| RefSeq | NP_569018.1 | 0 | 1 | 463 | 1 | 440 | soluble glycogen synthase-related [Arabidopsis thaliana] |
| RefSeq | NP_569018.1 | 0.007 | 513 | 593 | 369 | 460 | soluble glycogen synthase-related [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3guh_A | 0.000000000006 | 193 | 519 | 1 | 309 | A Chain A, Crystal Structure Of A Mammalian Sialyltransferase |
| PDB | 2r4u_A | 0.000000000006 | 193 | 519 | 1 | 309 | A Chain A, Crystal Structure Of A Mammalian Sialyltransferase |
| PDB | 2r4t_A | 0.000000000006 | 193 | 519 | 1 | 309 | A Chain A, Crystal Structure Of A Mammalian Sialyltransferase |
| PDB | 2qzs_A | 0.000000000006 | 193 | 519 | 1 | 309 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| PDB | 3cx4_A | 0.000000000007 | 193 | 519 | 1 | 309 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EX124729 | 248 | 173 | 420 | 0 |
| DK463354 | 254 | 1 | 253 | 0 |
| EX019035 | 243 | 5 | 247 | 0 |
| DK464901 | 263 | 1 | 262 | 0 |
| EL455989 | 328 | 162 | 489 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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