| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra024569 |
| Family | CE8 |
| Protein Properties | Length: 550 Molecular Weight: 60589.4 Isoelectric Point: 9.7957 |
| Chromosome | Chromosome/Scaffold: 09 Start: 24338872 End: 24340978 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 246 | 534 | 0 |
| LVVAKDGSGHYTSIQQAINAAAKLPRRNKRLVIYVKAGVYRENVEIKKSVKNVMVIGDGIDSTVVTGSRNVKDGTTTFRSATFAVAGSGFIARDITFENT AGPEKHQAVALRSGSDFSVFYGCSFKGYQDTLYLHSRRHFLKNCNVYGTVDFVFGDATAVLQNCNIYARKPMSGQKNTITAQSRKDPNENTGFVIQSSTV STAAETYLGRPWKQYSRTVFMKCSLGEMLNPAGWLPWSGDFALRTLYYGEYGNTGAGASVSGRVRWPGYHVLKTAAEAGKFTVENFLDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 550 Download |
| MDHKPPRCLY TKYIIPVIYV LSISHTNAYF ITSCKETPYP NVCAHHISNS PLNTLDYQTD 60 GLAFHDLVVS STMDQAVHLH RLVSKVKRRR SFHKHAKSAL LDCLELYEDT IDQLNHSRRS 120 YDFNFSAHDR QTSLSAAIAN QDTCKNGFKD FNLTSSYSKY FPIHVHRNLT KSISNSLAVS 180 KAAAEAVAEK HPGTAFTKFN KQGSSGGGGG GGGRRLMFWD NQFPSWIPLT DRKLLEGSVT 240 TAKPDLVVAK DGSGHYTSIQ QAINAAAKLP RRNKRLVIYV KAGVYRENVE IKKSVKNVMV 300 IGDGIDSTVV TGSRNVKDGT TTFRSATFAV AGSGFIARDI TFENTAGPEK HQAVALRSGS 360 DFSVFYGCSF KGYQDTLYLH SRRHFLKNCN VYGTVDFVFG DATAVLQNCN IYARKPMSGQ 420 KNTITAQSRK DPNENTGFVI QSSTVSTAAE TYLGRPWKQY SRTVFMKCSL GEMLNPAGWL 480 PWSGDFALRT LYYGEYGNTG AGASVSGRVR WPGYHVLKTA AEAGKFTVEN FLDGNYWITA 540 AGVPVNAGL* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02916 | PLN02916 | 6.0e-157 | 91 | 549 | 469 | + pectinesterase family protein | ||
| PLN02301 | PLN02301 | 4.0e-158 | 13 | 549 | 555 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02201 | PLN02201 | 1.0e-159 | 26 | 549 | 552 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02713 | PLN02713 | 2.0e-162 | 32 | 549 | 544 | + Probable pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 0 | 245 | 535 | 300 | + Pectinesterase. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN77092.1 | 0 | 9 | 549 | 4 | 507 | hypothetical protein [Vitis vinifera] |
| RefSeq | NP_173733.1 | 0 | 1 | 549 | 1 | 554 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002314796.1 | 0 | 17 | 549 | 16 | 531 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002511679.1 | 0 | 34 | 549 | 32 | 514 | Pectinesterase-2 precursor, putative [Ricinus communis] |
| RefSeq | XP_002527782.1 | 0 | 13 | 549 | 10 | 529 | Pectinesterase-1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 240 | 549 | 3 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 247 | 549 | 6 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1qjv_B | 8e-20 | 247 | 532 | 7 | 334 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 8e-20 | 247 | 532 | 7 | 334 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 8e-20 | 247 | 532 | 7 | 334 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DK467589 | 275 | 1 | 275 | 0 |
| DK472918 | 272 | 1 | 272 | 0 |
| DK486210 | 268 | 1 | 268 | 0 |
| DK458510 | 266 | 1 | 266 | 0 |
| CD820002 | 230 | 199 | 428 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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