| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra024602 |
| Family | GH28 |
| Protein Properties | Length: 443 Molecular Weight: 47449 Isoelectric Point: 4.6039 |
| Chromosome | Chromosome/Scaffold: 09 Start: 24108146 End: 24110234 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 68 | 397 | 0 |
| KACGTPKSVLLVPQGRSYLINATKFNGPCEQKLVIQIDGTIVAPDEPSNWDPKLQRTWLEFSKLEGIVFQGNGVIDGSGSKWWAASCKKNKSNPCKSAPT ALTIDSSSGVKVSGLTIQNSQQMNFIIARSDSVRVSKVMVSSPGDSPNTDGIHITGSTNVVLQDCKIGTGDDCVSIVNGSSNIKMKRIYCGPGHGISIGS LGNNNSTGIVTKVVLDTALLRETTNGLRIKTYQGGSGYVQDVRFTNVEMQDVSNPILIDQFYCDNPTSCQNQTSAVKISQIMYRNITGTTKSEKAIKFAC SDTVPCSHIVLNNVNLEGKDGQVEAYCNSA | |||
| Full Sequence |
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| Protein Sequence Length: 443 Download |
| MVYTDLDILE KLENFDIPED DAGDDYDSKV FDLPSFSSGK NLVSVDTFGA AGDGVSDDTQ 60 AFVSAWNKAC GTPKSVLLVP QGRSYLINAT KFNGPCEQKL VIQIDGTIVA PDEPSNWDPK 120 LQRTWLEFSK LEGIVFQGNG VIDGSGSKWW AASCKKNKSN PCKSAPTALT IDSSSGVKVS 180 GLTIQNSQQM NFIIARSDSV RVSKVMVSSP GDSPNTDGIH ITGSTNVVLQ DCKIGTGDDC 240 VSIVNGSSNI KMKRIYCGPG HGISIGSLGN NNSTGIVTKV VLDTALLRET TNGLRIKTYQ 300 GGSGYVQDVR FTNVEMQDVS NPILIDQFYC DNPTSCQNQT SAVKISQIMY RNITGTTKSE 360 KAIKFACSDT VPCSHIVLNN VNLEGKDGQV EAYCNSAEGF GYGVIHPSAD CLYSHDDKGF 420 DQSHTSGPVL VTEEAEIGHD EL* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 6.0e-83 | 44 | 399 | 360 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-86 | 70 | 397 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 7.0e-90 | 30 | 412 | 391 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 2.0e-106 | 43 | 407 | 368 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-124 | 38 | 427 | 392 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC98004.1 | 0 | 1 | 442 | 24 | 457 | Similar to gb |
| GenBank | AAF79584.1 | 0 | 1 | 442 | 671 | 1161 | AC007945_4 F28C11.9 [Arabidopsis thaliana] |
| RefSeq | NP_173760.2 | 0 | 1 | 442 | 25 | 460 | polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_177207.1 | 0 | 1 | 442 | 24 | 468 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002317091.1 | 0 | 8 | 434 | 1 | 430 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-20 | 138 | 358 | 115 | 338 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1hg8_A | 1e-19 | 141 | 395 | 80 | 341 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1nhc_F | 2e-18 | 141 | 385 | 79 | 320 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-18 | 141 | 385 | 79 | 320 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-18 | 141 | 385 | 79 | 320 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EV524933 | 216 | 228 | 443 | 0 |
| ES907693 | 238 | 1 | 235 | 0 |
| EV545642 | 201 | 243 | 443 | 0 |
| EV550328 | 224 | 79 | 302 | 0 |
| EX891854 | 199 | 245 | 443 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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