| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra024719 |
| Family | AA7 |
| Protein Properties | Length: 453 Molecular Weight: 50494.1 Isoelectric Point: 9.4523 |
| Chromosome | Chromosome/Scaffold: 09 Start: 23357717 End: 23359075 |
| Description | FAD-binding Berberine family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA7 | 2 | 446 | 0 |
| AIVTAKHVSHVQATVVCAKSNGFQLRIRSGGHDYEGLSYMSSVPFVILDMFNLRSITVDVSSKKAWVQAGATLGELYTKINEASKTLAFPAGVCATVGAG GHISGGGYGNLMRKYGITVDHVVDAQIVDVNGKLLNRASMGEDLFWAIRGGGGGSFGVILSWKINLVEVPRIMTVFRVNKTLEQGGTDVLYKWQLVSTKL PETLFIRAMPQVVNGTRRGEKTIADVFYAQFMGRADELMAIMNQSLPELGLKREDCQEMSWLNTTLFWADYPAGTPTSILLDRPSSPGDFFKSKSDYVKK PIPKEGMEKLWATMLKFKNVVWMQWNPYGGVMDRIPATATAFPHRKGNLFKIQYFTTWLDANTTEASLNMMREFYEVAEPYVSSNPRKAFFNYRDMDVGN NPSGQTNVDEAKIYGSKYFLGNLKRLMEVKAMYDPENFFKNEQSI | |||
| Full Sequence |
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| Protein Sequence Length: 453 Download |
| MAIVTAKHVS HVQATVVCAK SNGFQLRIRS GGHDYEGLSY MSSVPFVILD MFNLRSITVD 60 VSSKKAWVQA GATLGELYTK INEASKTLAF PAGVCATVGA GGHISGGGYG NLMRKYGITV 120 DHVVDAQIVD VNGKLLNRAS MGEDLFWAIR GGGGGSFGVI LSWKINLVEV PRIMTVFRVN 180 KTLEQGGTDV LYKWQLVSTK LPETLFIRAM PQVVNGTRRG EKTIADVFYA QFMGRADELM 240 AIMNQSLPEL GLKREDCQEM SWLNTTLFWA DYPAGTPTSI LLDRPSSPGD FFKSKSDYVK 300 KPIPKEGMEK LWATMLKFKN VVWMQWNPYG GVMDRIPATA TAFPHRKGNL FKIQYFTTWL 360 DANTTEASLN MMREFYEVAE PYVSSNPRKA FFNYRDMDVG NNPSGQTNVD EAKIYGSKYF 420 LGNLKRLMEV KAMYDPENFF KNEQSIPPAR VN* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam08031 | BBE | 2.0e-14 | 390 | 447 | 58 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
| COG0277 | GlcD | 5.0e-15 | 2 | 449 | 470 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| pfam01565 | FAD_binding_4 | 5.0e-22 | 2 | 137 | 137 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK93677.1 | 0 | 1 | 451 | 78 | 529 | unknown protein [Arabidopsis thaliana] |
| RefSeq | NP_173964.1 | 0 | 1 | 451 | 78 | 526 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
| RefSeq | NP_173966.1 | 0 | 1 | 451 | 78 | 527 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
| RefSeq | NP_564244.1 | 0 | 1 | 448 | 78 | 524 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
| RefSeq | NP_564245.1 | 0 | 1 | 451 | 78 | 529 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vte_A | 0 | 1 | 448 | 55 | 512 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
| PDB | 4dns_B | 0 | 1 | 448 | 56 | 495 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 4dns_A | 0 | 1 | 448 | 56 | 495 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_B | 0 | 1 | 448 | 54 | 495 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_A | 0 | 1 | 448 | 54 | 495 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FY454239 | 289 | 114 | 402 | 0 |
| DK554687 | 215 | 235 | 449 | 0 |
| HO777438 | 455 | 1 | 447 | 0 |
| EV118095 | 206 | 248 | 453 | 0 |
| DK536138 | 236 | 215 | 450 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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