| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra024939 |
| Family | CE8 |
| Protein Properties | Length: 362 Molecular Weight: 40086.2 Isoelectric Point: 8.5251 |
| Chromosome | Chromosome/Scaffold: 06 Start: 24316537 End: 24318050 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 60 | 351 | 0 |
| ITVSLDGHSQFRSVQDAVESIPKNNNMSIVIKIAPGFYREKVVVPATKPYITFKGAGRDVTVIEWHDRASDRGPDGQQLRTYQTASVTVFANYFSARNIT FTNTAPAPMPGMQGWQAVAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIASRFGSIAAHGRTCPEEKTGFT FVGCRVTGTGPLYVGRAMGQYSRIVYAYTYFDALVAHGGWDDWDHKSNKSKTAFFGVYNCYGPGAAATTGVSWARALDYESAHPFIAKSFVN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 362 Download |
| MAQLGSFTYS LSHLFSVSLL VFIFHCLCFR FSFVAACSNS TEEQHHHHRK WVGPSGHKVI 60 TVSLDGHSQF RSVQDAVESI PKNNNMSIVI KIAPGFYREK VVVPATKPYI TFKGAGRDVT 120 VIEWHDRASD RGPDGQQLRT YQTASVTVFA NYFSARNITF TNTAPAPMPG MQGWQAVAFR 180 ISGDKAYFSG CGFYGAQDTL CDDAGRHYFK ECYIEGSIDF IFGNGRSMYK DCELHSIASR 240 FGSIAAHGRT CPEEKTGFTF VGCRVTGTGP LYVGRAMGQY SRIVYAYTYF DALVAHGGWD 300 DWDHKSNKSK TAFFGVYNCY GPGAAATTGV SWARALDYES AHPFIAKSFV NGRHWIAPRD 360 V* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02304 | PLN02304 | 2.0e-101 | 31 | 360 | 362 | + probable pectinesterase | ||
| PLN02665 | PLN02665 | 2.0e-104 | 58 | 358 | 303 | + pectinesterase family protein | ||
| PLN02671 | PLN02671 | 6.0e-112 | 55 | 356 | 304 | + pectinesterase | ||
| PLN02682 | PLN02682 | 8.0e-132 | 41 | 358 | 332 | + pectinesterase family protein | ||
| PLN02634 | PLN02634 | 0 | 24 | 361 | 341 | + probable pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABD64977.1 | 0 | 1 | 360 | 1 | 359 | pectinesterase family protein [Brassica oleracea] |
| GenBank | ABD65006.1 | 0 | 28 | 360 | 11 | 343 | pectinesterase family protein [Brassica oleracea] |
| DDBJ | BAB09076.1 | 0 | 1 | 360 | 1 | 358 | pectin methylesterase-like [Arabidopsis thaliana] |
| RefSeq | NP_199561.1 | 0 | 1 | 360 | 1 | 361 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002303355.1 | 0 | 47 | 358 | 3 | 314 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 9.80909e-45 | 52 | 356 | 5 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 7e-34 | 62 | 356 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 1e-20 | 57 | 344 | 32 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 1qjv_B | 3e-20 | 57 | 327 | 5 | 314 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 3e-20 | 57 | 327 | 5 | 314 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
