y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra025099 |
Family | GH28 |
Protein Properties | Length: 401 Molecular Weight: 43463.3 Isoelectric Point: 6.7681 |
Chromosome | Chromosome/Scaffold: 06 Start: 25146740 End: 25149712 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 57 | 387 | 0 |
KAMCSSGGSNKTLLIPSDNTFLLQPLVFQGPCNSPSVQVQLDGKIVAPLNKAAWSGLKSYEWVSFHKIIGLTVLGSGTINGRGSSFWEANMPASKRPTQL HFKGCNNLEINGITSFDSPRNHISIRDCRQVKITQIKLIAPGDSPNTDGIDISTSTNVEIYDTIVGTGDDCVALNSGSININITRMQCGPGHGISVGSLG RDGEESIVENVQVTNCTFSETTNGARIKTWPNGKGYARNIVFKDITLTETKNPIIIDQHYMDKGHIHVEESSAVAISNVIFTDIHGTSQKDEIIKIDCSG VTSCKDIVLDRIDITTVDGNKPIIECSNAYG |
Full Sequence |
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Protein Sequence Length: 401 Download |
MKSSYLRHRM EIIVRVVFVL TLLNFGFVNS QIYDVLKFGA EGDGTTDDSK AFVAAWKAMC 60 SSGGSNKTLL IPSDNTFLLQ PLVFQGPCNS PSVQVQLDGK IVAPLNKAAW SGLKSYEWVS 120 FHKIIGLTVL GSGTINGRGS SFWEANMPAS KRPTQLHFKG CNNLEINGIT SFDSPRNHIS 180 IRDCRQVKIT QIKLIAPGDS PNTDGIDIST STNVEIYDTI VGTGDDCVAL NSGSININIT 240 RMQCGPGHGI SVGSLGRDGE ESIVENVQVT NCTFSETTNG ARIKTWPNGK GYARNIVFKD 300 ITLTETKNPI IIDQHYMDKG HIHVEESSAV AISNVIFTDI HGTSQKDEII KIDCSGVTSC 360 KDIVLDRIDI TTVDGNKPII ECSNAYGKST NTYDGCLKTK * 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-86 | 35 | 370 | 344 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 1.0e-93 | 9 | 388 | 398 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 3.0e-103 | 31 | 394 | 370 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 3.0e-115 | 27 | 390 | 369 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 2.0e-165 | 10 | 392 | 383 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC79138.1 | 0 | 10 | 398 | 1 | 380 | putative polygalacturonase [Arabidopsis thaliana] |
EMBL | CAA20037.1 | 0 | 20 | 392 | 1 | 361 | putative polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_195292.2 | 0 | 10 | 392 | 1 | 381 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_199296.1 | 0 | 59 | 398 | 1 | 331 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_199297.1 | 0 | 10 | 399 | 1 | 381 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ib4_B | 5e-22 | 127 | 384 | 74 | 332 | A Chain A, Crystal Structure Of The Putative Acetylxylan Esterase From Clostridium Acetobutylicum, Northeast Structural Genomics Target Car6 |
PDB | 1ib4_A | 5e-22 | 127 | 384 | 74 | 332 | A Chain A, Crystal Structure Of The Putative Acetylxylan Esterase From Clostridium Acetobutylicum, Northeast Structural Genomics Target Car6 |
PDB | 1ia5_A | 5e-22 | 127 | 384 | 74 | 332 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1nhc_F | 2e-20 | 123 | 384 | 68 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-20 | 123 | 384 | 68 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |