| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra025103 |
| Family | GH28 |
| Protein Properties | Length: 401 Molecular Weight: 43369.8 Isoelectric Point: 4.7821 |
| Chromosome | Chromosome/Scaffold: 06 Start: 25176866 End: 25179622 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 59 | 387 | 0 |
| MCSSGGSNKTLLIPSDNTFLLQPLVFQGPCNSPSVQVKLEGKIVAPLNKAAWSDFKSYEWVSFNKIIGLTVLGSGTINGRGSSFWEANMSASKRPTQLYF EGCNNLEINGIASLDSPRNHISIHNCTQVKITQIKLIAPGDSPNTDGIDISTSTDVEIYDTIVGTGDDCVALNSGSININITRMQCGPGHGISVGSLGKD GEESIVENVQVTNCTFNETNNGARIKTWPNGKGYARNIVFMDITLTETKNPIIIDQQYIDKGRIDVEESSAVAISNVTFTNFHGTSGQDEIIKIDCSEVT YCKDIVLDRINITTVDGNKPIVECSNAYG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 401 Download |
| MKSSYHPHIM EIIVRVVFVL TVVNFGFLNG QVYDVLKFGA KGDGTTNDSE AFVEAWKAMC 60 SSGGSNKTLL IPSDNTFLLQ PLVFQGPCNS PSVQVKLEGK IVAPLNKAAW SDFKSYEWVS 120 FNKIIGLTVL GSGTINGRGS SFWEANMSAS KRPTQLYFEG CNNLEINGIA SLDSPRNHIS 180 IHNCTQVKIT QIKLIAPGDS PNTDGIDIST STDVEIYDTI VGTGDDCVAL NSGSININIT 240 RMQCGPGHGI SVGSLGKDGE ESIVENVQVT NCTFNETNNG ARIKTWPNGK GYARNIVFMD 300 ITLTETKNPI IIDQQYIDKG RIDVEESSAV AISNVTFTNF HGTSGQDEII KIDCSEVTYC 360 KDIVLDRINI TTVDGNKPIV ECSNAYGNST NAYDGCLKTQ * 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 6.0e-85 | 35 | 370 | 344 | + polygalacturonase ADPG | ||
| PLN02188 | PLN02188 | 3.0e-86 | 33 | 385 | 365 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02793 | PLN02793 | 1.0e-99 | 31 | 394 | 370 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 6.0e-112 | 27 | 398 | 379 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 6.0e-160 | 25 | 391 | 367 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC79138.1 | 0 | 10 | 398 | 1 | 380 | putative polygalacturonase [Arabidopsis thaliana] |
| EMBL | CAA20037.1 | 0 | 25 | 398 | 6 | 369 | putative polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_195292.2 | 0 | 10 | 398 | 1 | 389 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_199296.1 | 0 | 59 | 398 | 1 | 331 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_199297.1 | 0 | 10 | 399 | 1 | 381 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ib4_B | 1e-20 | 127 | 384 | 74 | 332 | B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor |
| PDB | 1ib4_A | 1e-20 | 127 | 384 | 74 | 332 | B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor |
| PDB | 1ia5_A | 1e-20 | 127 | 384 | 74 | 332 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 2iq7_G | 1e-19 | 134 | 384 | 79 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 1e-19 | 134 | 384 | 79 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
