| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra025186 |
| Family | GH5 |
| Protein Properties | Length: 560 Molecular Weight: 63749.6 Isoelectric Point: 8.7055 |
| Chromosome | Chromosome/Scaffold: 06 Start: 22896555 End: 22899014 |
| Description | Cellulase (glycosyl hydrolase family 5) protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH5 | 35 | 348 | 7.00649e-44 |
| IVDDGNKGRRVKLTCVNWPSHLETAVAEGLSKQPLDSIGAKIVSMGFNCVRLTWPLYLATDESFSGIMTVRQSLRKLGLLEAISGFQANNPYILDLPLIK AFQEVVSSLGKHRLMVILDNHISQPGWCCNDNDGNGFFGDRYLNPQLWIRGLKRMATMFANVSSNVVGMSLRNELRGPKQNIKDWYKYMREGAEAVHSVN PNILVIVSGLNYETDLSFLRDKPFEVTFRRKLVFEIHWYGFWSSWEGDNLNKICGRETENIMKMSGFLLEKGFPLLVSEFGIDQRGNNVNDNRFLSCFMA LAADLDLDWALWTL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 560 Download |
| MERFFFLSLF LLLLPLFFII NITFAFPLST DSRWIVDDGN KGRRVKLTCV NWPSHLETAV 60 AEGLSKQPLD SIGAKIVSMG FNCVRLTWPL YLATDESFSG IMTVRQSLRK LGLLEAISGF 120 QANNPYILDL PLIKAFQEVV SSLGKHRLMV ILDNHISQPG WCCNDNDGNG FFGDRYLNPQ 180 LWIRGLKRMA TMFANVSSNV VGMSLRNELR GPKQNIKDWY KYMREGAEAV HSVNPNILVI 240 VSGLNYETDL SFLRDKPFEV TFRRKLVFEI HWYGFWSSWE GDNLNKICGR ETENIMKMSG 300 FLLEKGFPLL VSEFGIDQRG NNVNDNRFLS CFMALAADLD LDWALWTLAG SYYVREKTIG 360 YDETYGVLDW SWSSIRNSTI LQMISSIQSP FRGPGLMETH PKKIIFHPST GLCIVRKSLF 420 QLKLGSCDRS ESFRLSSQRV LSLAEEKILC LKAYEKGKSV KLRLYFSESY CSRWKLLSES 480 KMQLSSITKN GESVCLDVDS DSNNIVTKSC KCLEGDASCD PKSQWFKVVT STRSRFRANP 540 FLQVSPYSKT FLQEPLSVL* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG2730 | BglC | 0.0003 | 21 | 325 | 338 | + Endoglucanase [Carbohydrate transport and metabolism] | ||
| pfam00150 | Cellulase | 1.0e-12 | 66 | 325 | 270 | + Cellulase (glycosyl hydrolase family 5). | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB02432.1 | 0 | 1 | 558 | 9 | 561 | unnamed protein product [Arabidopsis thaliana] |
| RefSeq | NP_189244.1 | 0 | 1 | 558 | 1 | 551 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002312657.1 | 0 | 25 | 533 | 9 | 513 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002315653.1 | 0 | 24 | 534 | 1 | 507 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515055.1 | 0 | 25 | 545 | 31 | 547 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ece_B | 0.000002 | 30 | 315 | 8 | 284 | A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic Domain In Complex With A Cellotetraose |
| PDB | 1ece_A | 0.000002 | 30 | 315 | 8 | 284 | A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic Domain In Complex With A Cellotetraose |
| PDB | 1vrx_B | 0.000008 | 30 | 271 | 8 | 238 | A Chain A, Endocellulase E1 From Acidothermus Cellulolyticus Mutant Y245g |
| PDB | 1vrx_A | 0.000008 | 30 | 271 | 8 | 238 | A Chain A, Endocellulase E1 From Acidothermus Cellulolyticus Mutant Y245g |
| PDB | 3axx_C | 0.0001 | 45 | 315 | 61 | 344 | A Chain A, Functional Analysis Of Hyperthermophilic Endocellulase From The Archaeon Pyrococcus Horikoshii |
