| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra025187 |
| Family | GH5 |
| Protein Properties | Length: 514 Molecular Weight: 56664.2 Isoelectric Point: 4.483 |
| Chromosome | Chromosome/Scaffold: 06 Start: 22892669 End: 22896069 |
| Description | Cellulase (glycosyl hydrolase family 5) protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH5 | 12 | 324 | 1.70006e-41 |
| IIDEKGERTKLACVNWPAHLQPAVAEGLSKQPVDAVAQKIVAMGFNCVRLTWPLDLATNVTLATSVTVRDSFQSLGLNTDISGFETKNPSMIDLPLIEAY QSVVTTLGNYNVMVILDNHLTKPGWCCGNDDGNGFFGDIFFDPATWISGLTYMATSFKDTSNVVGMSLRNELRGPKQNVDDWFKYMLQGAEAVHEANPYA LVILSGFSYDTDLSFVRSRPVSLTFSGKLVFELHRYSFTNVDIWSSKNPNDACGEILKIIDDGGGFLLRDFPVFLSEFGIDLRGGNINDDRYIGCILGWA AENDIDWSIWALQ | |||
| Full Sequence |
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| Protein Sequence Length: 514 Download |
| MAYLLSTNSR WIIDEKGERT KLACVNWPAH LQPAVAEGLS KQPVDAVAQK IVAMGFNCVR 60 LTWPLDLATN VTLATSVTVR DSFQSLGLNT DISGFETKNP SMIDLPLIEA YQSVVTTLGN 120 YNVMVILDNH LTKPGWCCGN DDGNGFFGDI FFDPATWISG LTYMATSFKD TSNVVGMSLR 180 NELRGPKQNV DDWFKYMLQG AEAVHEANPY ALVILSGFSY DTDLSFVRSR PVSLTFSGKL 240 VFELHRYSFT NVDIWSSKNP NDACGEILKI IDDGGGFLLR DFPVFLSEFG IDLRGGNIND 300 DRYIGCILGW AAENDIDWSI WALQGSYYLR EGVVGMTEYY GVLNSDWISV RNNSFMQRLS 360 LIQSTLQGPD PQPEVSNLIF HPLTGLCMLQ SSLDPTKVNL GRCNQSQPWD YTTDNTLKLK 420 NIPLCLANTG PNAPVKLSEA SCSTPSLSQW QPISASNMLL AAKSTNNSLC LDVDGDNNVV 480 ATNCKCVNGE DSSCDPMSQW FKIVKVNKAN EDI* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00652 | Ricin_B_lectin | 0.0002 | 383 | 478 | 102 | + Ricin-type beta-trefoil lectin domain. | ||
| smart00458 | RICIN | 8.0e-6 | 379 | 477 | 103 | + Ricin-type beta-trefoil. Carbohydrate-binding domain formed from presumed gene triplication. | ||
| cd00161 | RICIN | 1.0e-6 | 377 | 484 | 117 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
| pfam00150 | Cellulase | 1.0e-7 | 41 | 323 | 293 | + Cellulase (glycosyl hydrolase family 5). | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD31066.1 | 0 | 1 | 508 | 1 | 507 | AC007357_15 F3F19.15 [Arabidopsis thaliana] |
| RefSeq | NP_172772.2 | 0 | 1 | 508 | 31 | 537 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
| RefSeq | NP_189245.1 | 0 | 1 | 508 | 1 | 508 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002285424.1 | 0 | 1 | 504 | 25 | 526 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002515055.1 | 0 | 2 | 510 | 31 | 537 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1vrx_B | 0.000000000002 | 7 | 294 | 8 | 288 | A Chain A, Endocellulase E1 From Acidothermus Cellulolyticus Mutant Y245g |
| PDB | 1vrx_A | 0.000000000002 | 7 | 294 | 8 | 288 | A Chain A, Endocellulase E1 From Acidothermus Cellulolyticus Mutant Y245g |
| PDB | 1ece_B | 0.000000000002 | 7 | 294 | 8 | 288 | A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic Domain In Complex With A Cellotetraose |
| PDB | 1ece_A | 0.000000000002 | 7 | 294 | 8 | 288 | A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic Domain In Complex With A Cellotetraose |
| PDB | 2zun_C | 0.00002 | 17 | 359 | 56 | 408 | A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic Domain In Complex With A Cellotetraose |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EV145040 | 208 | 307 | 514 | 0 |
| DK465433 | 281 | 112 | 391 | 0 |
| EV145270 | 217 | 89 | 305 | 0 |
| CX189646 | 182 | 317 | 498 | 0 |
| CK119337 | 211 | 250 | 460 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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