| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra025216 |
| Family | GH28 |
| Protein Properties | Length: 471 Molecular Weight: 51159.5 Isoelectric Point: 8.9252 |
| Chromosome | Chromosome/Scaffold: 06 Start: 22715034 End: 22719044 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 91 | 428 | 0 |
| KAACKVVGGKVEIPAGKEFMVKAVTLQGPCKEETVVQIEGTLVAPTKTGSWPKSSLFQWLNFKWVSHVTIQGSGTLDARGYNWWNLDNYQTQKNKYIPPM KPTALRFYSSGNVTVRDISIVNSPLCHLKFDDSDGVKINNITISSPENSPNTDGIHLQNTRNVEIQHSNIACGDDCVSIQTGSSNVHIHHISCGPGHGIS IGSLGKDETVACVSDIIVEDVSIQNTLAGVRIKTWQGGLGVVKNLTFSNIQVTDVQVPIVIDQYYCDKSKCKNQTSAVSISDVKYNNIVGSFTAQPVRIA CSNNVPCMDVDLMDIRLRPSGGIRGLQTHQQQHALCWN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 471 Download |
| MKIIKSSPLL AMLIGFIIIA AAISTISVEG RKHHVKRIKP KHRRHSRDTP TGSPAPAPYP 60 STHDGVFDIL SFGAKGDGIS DDSKALIGAW KAACKVVGGK VEIPAGKEFM VKAVTLQGPC 120 KEETVVQIEG TLVAPTKTGS WPKSSLFQWL NFKWVSHVTI QGSGTLDARG YNWWNLDNYQ 180 TQKNKYIPPM KPTALRFYSS GNVTVRDISI VNSPLCHLKF DDSDGVKINN ITISSPENSP 240 NTDGIHLQNT RNVEIQHSNI ACGDDCVSIQ TGSSNVHIHH ISCGPGHGIS IGSLGKDETV 300 ACVSDIIVED VSIQNTLAGV RIKTWQGGLG VVKNLTFSNI QVTDVQVPIV IDQYYCDKSK 360 CKNQTSAVSI SDVKYNNIVG SFTAQPVRIA CSNNVPCMDV DLMDIRLRPS GGIRGLQTHQ 420 QQHALCWNSY GKTQGPLVPS SIGYCLKKSN IDGYYPKRFI ASSHEKLCPL * 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 2.0e-86 | 62 | 431 | 376 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-87 | 100 | 407 | 309 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 2.0e-89 | 49 | 412 | 369 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 1.0e-91 | 72 | 439 | 373 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-108 | 66 | 440 | 380 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA66407.1 | 0 | 85 | 411 | 1 | 328 | polygalacturonase precursor homologue [Arabidopsis thaliana] |
| RefSeq | NP_189293.1 | 0 | 29 | 469 | 29 | 469 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002266099.1 | 0 | 29 | 468 | 29 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002312682.1 | 0 | 31 | 469 | 31 | 467 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527898.1 | 0 | 1 | 468 | 1 | 477 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-29 | 160 | 358 | 113 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 1e-24 | 68 | 447 | 22 | 361 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1nhc_F | 6e-21 | 96 | 399 | 21 | 310 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 6e-21 | 96 | 399 | 21 | 310 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 6e-21 | 96 | 399 | 21 | 310 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
