| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra025274 |
| Family | PL1 |
| Protein Properties | Length: 413 Molecular Weight: 45890.6 Isoelectric Point: 7.9022 |
| Chromosome | Chromosome/Scaffold: 06 Start: 22457584 End: 22460375 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 133 | 331 | 0 |
| IIFKRDMVIRLKKELIITSFKTIDGRGSSVHITDGPCIKIHYETNIIIHGINIHDCKPGSGGMIRDGSRHTGWWVPSDGDAVAIFGGKHIWIDHCSLSNC DDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHVVEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 413 Download |
| MVSYSNNPFV YAFICLLSIG NTFVLSSSSL PHTQDPNLVV DEVNRSVFNA SRRSLAYLSC 60 RTGNPIDDCW RCDPNWETYR QRLADCAIGF GKNAIGGRDG RIYVVTDSAN DDPVNPRPGT 120 LRHAVTQEEP LWIIFKRDMV IRLKKELIIT SFKTIDGRGS SVHITDGPCI KIHYETNIII 180 HGINIHDCKP GSGGMIRDGS RHTGWWVPSD GDAVAIFGGK HIWIDHCSLS NCDDGLIDAI 240 HGSTAITISN NYMTHHDKVM LLGHSDSYTQ DKNMQVTIAF NHVVEGLVQR MPRCRHGYFH 300 VVNNDYTHWE MYAIGGSASP TIYSQGNRFL APNTRFNKEV TKHEDAPESE WRGWNWRSEG 360 DMLLNGAYFR QSGAGASSTY ARASSLSARP SSLVGSITTT AGTLSCRRGR RC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 5.0e-28 | 89 | 329 | 260 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-69 | 144 | 329 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 6.0e-79 | 138 | 333 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_189376.1 | 0 | 1 | 412 | 1 | 412 | pectate lyase family protein [Arabidopsis thaliana] |
| Swiss-Prot | Q9LTZ0 | 0 | 4 | 412 | 2 | 409 | PEL11_ARATH RecName: Full=Putative pectate lyase 11; Flags: Precursor |
| RefSeq | XP_002300069.1 | 0 | 23 | 412 | 19 | 403 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002322215.1 | 0 | 24 | 412 | 19 | 403 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526952.1 | 0 | 17 | 412 | 5 | 396 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 64 | 405 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 64 | 405 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-18 | 83 | 331 | 2 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_B | 2e-17 | 142 | 403 | 78 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_A | 2e-17 | 142 | 403 | 78 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
