| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra025376 |
| Family | CE8 |
| Protein Properties | Length: 318 Molecular Weight: 35358.9 Isoelectric Point: 7.2237 |
| Chromosome | Chromosome/Scaffold: 06 Start: 21881183 End: 21882758 |
| Description | pectin methylesterase 31 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 7 | 297 | 0 |
| VLVAQDGTGDYLSVQDAVDSVPLGNTCRTVIRISPGIYRQPVYVPKRKNFITFAGISPEITVLTWNNTASKIEHHQASRVIGTGTFGCGSVIVEGEDFIA ENVTFENSSPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHHGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSQGFITAQSRKTSQESTGYVFLR CVITGNGQCGYMYLGRPWGPFGRVVLAYTYMDACIRNVGWHNWGNAENERSACFYEYRCFGPGSCSSGRVTWSRELMDEEAGHFLHHSFVD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 318 Download |
| MATARVVLVA QDGTGDYLSV QDAVDSVPLG NTCRTVIRIS PGIYRQPVYV PKRKNFITFA 60 GISPEITVLT WNNTASKIEH HQASRVIGTG TFGCGSVIVE GEDFIAENVT FENSSPEGSG 120 QAVAIRVTAD RCAFYNCRFL GWQDTLYLHH GKQYLKDCYI EGSVDFIFGN STALLEHCHI 180 HCKSQGFITA QSRKTSQEST GYVFLRCVIT GNGQCGYMYL GRPWGPFGRV VLAYTYMDAC 240 IRNVGWHNWG NAENERSACF YEYRCFGPGS CSSGRVTWSR ELMDEEAGHF LHHSFVDPSQ 300 DRPWLCLRMG VKTPYSA* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam01095 | Pectinesterase | 9.0e-87 | 7 | 299 | 310 | + Pectinesterase. | ||
| PLN02665 | PLN02665 | 6.0e-95 | 2 | 305 | 312 | + pectinesterase family protein | ||
| PLN02432 | PLN02432 | 2.0e-97 | 1 | 305 | 307 | + putative pectinesterase | ||
| PLN02682 | PLN02682 | 9.0e-109 | 4 | 305 | 310 | + pectinesterase family protein | ||
| PLN02773 | PLN02773 | 0 | 1 | 317 | 317 | + pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABN08265.1 | 0 | 4 | 317 | 3 | 316 | Pectinesterase [Medicago truncatula] |
| RefSeq | NP_566842.1 | 0 | 1 | 317 | 1 | 317 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002283941.1 | 0 | 4 | 317 | 3 | 316 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002305315.1 | 0 | 4 | 317 | 3 | 316 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002530008.1 | 0 | 5 | 317 | 4 | 316 | Pectinesterase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 7 | 278 | 9 | 281 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 2.8026e-45 | 8 | 309 | 6 | 297 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1qjv_B | 2e-24 | 17 | 292 | 18 | 330 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 2e-24 | 17 | 292 | 18 | 330 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 2e-24 | 17 | 292 | 18 | 330 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EG480743 | 273 | 1 | 273 | 0 |
| DY292729 | 297 | 6 | 302 | 0 |
| DY292725 | 305 | 6 | 310 | 0 |
| GR994392 | 302 | 4 | 305 | 0 |
| ES794113 | 289 | 3 | 291 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
