| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra025631 |
| Family | GH28 |
| Protein Properties | Length: 423 Molecular Weight: 47245.6 Isoelectric Point: 7.6659 |
| Chromosome | Chromosome/Scaffold: 04 Start: 7388275 End: 7391093 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 63 | 403 | 0 |
| IGSKSTMEIPQGRTFLLQPVGFHGPCKSKKIVFSISGNLTAPYAPYQWKCNEDYCHQWIEFAHINGLYIDGPGTIDGQGPKWWSLNCKKYEQGMVISHSS NVHISNIVVKDSPNFQMSLEDSKWIFVKQLTITADGDSPNTDGIHIQRCLNVFVHNSNIHTGDDCISIGDGSKYVNISGISCGPGHGISKFYIAQTSIGS LGRNGSKETVENVIVRDCIFRKTDNGVRIKTWQGGRGLVRNILFERIKLHGVTRPIIIDQFYCPHSQCNNHTDAVEIKNIMYKHIHGTAVKKPFVELLCS KSVPCRDIYMNDIDILDQEEGKGKKYHKRSSHPPAECINVR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 423 Download |
| MDFFMLLTYL FSLFHNNQTG PSHSSPDVNS KIFNVFDYGA IGNGYADDTK AFMDAWEDTC 60 NCIGSKSTME IPQGRTFLLQ PVGFHGPCKS KKIVFSISGN LTAPYAPYQW KCNEDYCHQW 120 IEFAHINGLY IDGPGTIDGQ GPKWWSLNCK KYEQGMVISH SSNVHISNIV VKDSPNFQMS 180 LEDSKWIFVK QLTITADGDS PNTDGIHIQR CLNVFVHNSN IHTGDDCISI GDGSKYVNIS 240 GISCGPGHGI SKFYIAQTSI GSLGRNGSKE TVENVIVRDC IFRKTDNGVR IKTWQGGRGL 300 VRNILFERIK LHGVTRPIII DQFYCPHSQC NNHTDAVEIK NIMYKHIHGT AVKKPFVELL 360 CSKSVPCRDI YMNDIDILDQ EEGKGKKYHK RSSHPPAECI NVRGESNGAI KPKLACLDSE 420 RH* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 5.0e-89 | 28 | 407 | 381 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 2.0e-89 | 30 | 418 | 392 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-91 | 64 | 377 | 320 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 4.0e-93 | 1 | 413 | 427 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02793 | PLN02793 | 3.0e-96 | 31 | 419 | 398 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB10216.1 | 0 | 2 | 422 | 3 | 411 | polygalacturonase-like protein [Arabidopsis thaliana] |
| EMBL | CBI15273.1 | 0 | 5 | 417 | 5 | 388 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_198807.1 | 0 | 2 | 422 | 3 | 373 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002267133.1 | 0 | 33 | 421 | 26 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002267182.1 | 0 | 5 | 417 | 5 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 9e-20 | 117 | 324 | 99 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_B | 5e-19 | 136 | 397 | 83 | 335 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_A | 5e-19 | 136 | 397 | 83 | 335 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ia5_A | 5e-19 | 136 | 397 | 83 | 335 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 1nhc_F | 1e-18 | 67 | 377 | 24 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
