| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra025675 |
| Family | CBM43 |
| Protein Properties | Length: 448 Molecular Weight: 47700.5 Isoelectric Point: 6.9258 |
| Chromosome | Chromosome/Scaffold: 06 Start: 7186054 End: 7189979 |
| Description | 3-phosphoserine phosphatase |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 22 | 103 | 1.1e-32 |
| WCVCREGLSEAMLQKTLDYACGAGADCGPIHQNGPCFNPNTVKSHCSYAVNSFFQKKGQSQGTCDFAGTATVSASDPSYTSC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 448 Download |
| MAVVVVLAVI LLAMVGHSSG AWCVCREGLS EAMLQKTLDY ACGAGADCGP IHQNGPCFNP 60 NTVKSHCSYA VNSFFQKKGQ SQGTCDFAGT ATVSASDPSY TSCPFPASAS GSGTTTPVTT 120 TPSTRVPTTT NTRPYTSSTG GGLGIPSAPS LMEALTTSRV VPLRVACRKL SSVSANFSCL 180 EFKSYPCRSG RVSVMNHPKL LRPVSSSLQP QELSALGHEG NVVPSKEILD LWRDVEAVCF 240 DVDSTVCVDE GIDELAEFCG AGKAVSEWTA RAMGGSVPFE EALAARLSLF KPSLSKVEEY 300 LQKRPPRLSP GIEELVKKLR ANKIDVYLIS GGFRQMINPV ASILGIPREN IFANNILFGN 360 SGEFVGFDEN EPTSRSGGKA KAVQQIRETR LYKTMAMIGD GATDLEARKP GGADLFICYA 420 GVQLREAVAA QVDWLIFKFE PLLNSLD* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG0560 | SerB | 1.0e-29 | 237 | 437 | 205 | + Phosphoserine phosphatase [Amino acid transport and metabolism] | ||
| TIGR01488 | HAD-SF-IB | 2.0e-31 | 237 | 410 | 178 | + Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. This model represents a subfamily of the Haloacid Dehalogenase superfamily of aspartate-nucleophile hydrolases. Subfamily IA, B, C and D are distinguished from the rest of the superfamily by the presence of a variable domain between the first and second conserved catalytic motifs. In subfamilies IA and IB, this domain consists of an alpha-helical bundle. It was necessary to model these two subfamilies separately, breaking them at a an apparent phylogenetic bifurcation, so that the resulting model(s) are not so broadly defined that members of subfamily III (which lack the variable domain) are included. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences [Unknown function, Enzymes of unknown specificity]. | ||
| smart00768 | X8 | 5.0e-41 | 22 | 105 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| TIGR00338 | serB | 2.0e-42 | 237 | 443 | 213 | + phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins [Amino acid biosynthesis, Serine family]. | ||
| PLN02954 | PLN02954 | 9.0e-154 | 224 | 447 | 224 | + phosphoserine phosphatase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0008152 | metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA33806.1 | 0 | 152 | 447 | 1 | 295 | 3-phosphoserine phosphatase [Arabidopsis thaliana] |
| RefSeq | NP_973858.1 | 0 | 152 | 447 | 1 | 295 | PSP (3-PHOSPHOSERINE PHOSPHATASE); phosphoserine phosphatase [Arabidopsis thaliana] |
| RefSeq | XP_002284065.1 | 0 | 152 | 447 | 1 | 294 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002318590.1 | 0 | 152 | 447 | 1 | 295 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002514657.1 | 0 | 152 | 447 | 1 | 295 | phosphoserine phosphatase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nnl_B | 0 | 222 | 447 | 1 | 224 | A Chain A, Crystal Structure Of Human Phosphoserine Phosphatase |
| PDB | 1nnl_A | 0 | 222 | 447 | 1 | 224 | A Chain A, Crystal Structure Of Human Phosphoserine Phosphatase |
| PDB | 1l8o_B | 0 | 222 | 447 | 1 | 224 | A Chain A, Crystal Structure Of Human Phosphoserine Phosphatase |
| PDB | 1l8o_A | 0 | 222 | 447 | 1 | 224 | A Chain A, Crystal Structure Of Human Phosphoserine Phosphatase |
| PDB | 1l8l_B | 0 | 222 | 447 | 1 | 224 | A Chain A, Molecular Basis For The Local Confomational Rearrangement Of Human Phosphoserine Phosphatase |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| serine biosynthesis | RXN0-5114 | EC-3.1.3.3 | phosphoserine phosphatase |
