| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra025759 |
| Family | GT4 |
| Protein Properties | Length: 479 Molecular Weight: 53449.8 Isoelectric Point: 10.3688 |
| Chromosome | Chromosome/Scaffold: 06 Start: 7745178 End: 7746972 |
| Description | UDP-Glycosyltransferase superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT4 | 274 | 440 | 1e-22 |
| DILFGIINSVSRGKGQDLFLRAFHESLEIIKETKKHEVPTMHAVVVGSDMSAQTKFETELRRFVQEKQLEKVVHFVNKTMKVAPYLAAIDVLVQNSQARG ECFGRITIEAMAFKLPVLGTAAGGTMEIVVNRTTGLLHNAGKEGVLPLARNIVKLATNVEMRTTMGK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 479 Download |
| MGKPSSTSVW VTMMQKKKRW PLMILLFLSV STVGMILVRS AFDSCSISGN RCGRFVVEKQ 60 ESSDVKIRSA NPLGFMKSKL VLLVSHELSL SGGPLLLMEL AFLLRGVGAE VVWTTNQKPV 120 EADEVVNVLE HKMLDRGVKV ISAKSQKAVD TALKSDLVVL NTAVAGKWLD AVLKDNVPKV 180 LPKILWWIHE MRGHYFKADL VKHLPFVAGA MIDSHATAEY WKNRTHDRLG IKMPKTYVVH 240 LGNSKELMEV AEDSFAKKVL REQVRESLGV QSDDILFGII NSVSRGKGQD LFLRAFHESL 300 EIIKETKKHE VPTMHAVVVG SDMSAQTKFE TELRRFVQEK QLEKVVHFVN KTMKVAPYLA 360 AIDVLVQNSQ ARGECFGRIT IEAMAFKLPV LGTAAGGTME IVVNRTTGLL HNAGKEGVLP 420 LARNIVKLAT NVEMRTTMGK KGYERVKEMF MEHHMSHRIA SVLREVLQHA KVHSRTTK* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd03807 | GT1_WbnK_like | 1.0e-18 | 182 | 464 | 290 | + This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis. | ||
| cd03819 | GT1_WavL_like | 1.0e-19 | 262 | 450 | 189 | + This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core. | ||
| cd03798 | GT1_wlbH_like | 4.0e-20 | 208 | 466 | 262 | + This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS. | ||
| cd03808 | GT1_cap1E_like | 4.0e-23 | 228 | 455 | 229 | + This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides. | ||
| cd03801 | GT1_YqgM_like | 1.0e-30 | 92 | 464 | 389 | + This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAG12556.1 | 0 | 1 | 477 | 1 | 454 | AC007797_16 Unknown Protein [Arabidopsis thaliana] |
| GenBank | AAG13070.1 | 0 | 91 | 474 | 18 | 400 | AC023754_8 Hypothetical protein [Arabidopsis thaliana] |
| EMBL | CBI19755.1 | 0 | 1 | 474 | 1 | 461 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_173401.1 | 0 | 1 | 477 | 1 | 475 | glycosyl transferase family 1 protein [Arabidopsis thaliana] |
| RefSeq | NP_177675.1 | 0 | 16 | 474 | 8 | 461 | glycosyl transferase family 1 protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jjm_L | 0.00000002 | 335 | 471 | 258 | 390 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
| PDB | 2jjm_K | 0.00000002 | 335 | 471 | 258 | 390 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
| PDB | 2jjm_J | 0.00000002 | 335 | 471 | 258 | 390 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
| PDB | 2jjm_I | 0.00000002 | 335 | 471 | 258 | 390 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
| PDB | 2jjm_H | 0.00000002 | 335 | 471 | 258 | 390 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
