| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra025997 |
| Family | GH28 |
| Protein Properties | Length: 358 Molecular Weight: 39668.3 Isoelectric Point: 9.0508 |
| Chromosome | Chromosome/Scaffold: 06 Start: 6591919 End: 6593174 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 11 | 341 | 0 |
| EDACAHSGRNQIYIPRKKFYMSAVMFKGPCKGKTMFFNNGLLLAPLHPKHIKQDAWINFQYVDNLVVTGHGTIDGQGSRSWSSTNFDMNRRLPANMAFDF VRKSRINGLISLNSKSEHLNFFCVDHFNISHVNVTAPRNSPNTDGIKIGMSSNVKIRDSHIGSGDDCIAILSGNTNFDIHNITCGPGHGISVGSLGKHKE EKNVEDITVRDTVFNGTSDGIRFKTWESSVAEITVSGFLYENIKMVDVRHPINIDQKYCPYPPCPKLGDSHVQIRNVTFKNIWGTSRNKVAVNLQCSKSF PCKDIQLIDINLIHNGSDGPATALCENVKGS | |||
| Full Sequence |
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| Protein Sequence Length: 358 Download |
| MVFQAFIKAW EDACAHSGRN QIYIPRKKFY MSAVMFKGPC KGKTMFFNNG LLLAPLHPKH 60 IKQDAWINFQ YVDNLVVTGH GTIDGQGSRS WSSTNFDMNR RLPANMAFDF VRKSRINGLI 120 SLNSKSEHLN FFCVDHFNIS HVNVTAPRNS PNTDGIKIGM SSNVKIRDSH IGSGDDCIAI 180 LSGNTNFDIH NITCGPGHGI SVGSLGKHKE EKNVEDITVR DTVFNGTSDG IRFKTWESSV 240 AEITVSGFLY ENIKMVDVRH PINIDQKYCP YPPCPKLGDS HVQIRNVTFK NIWGTSRNKV 300 AVNLQCSKSF PCKDIQLIDI NLIHNGSDGP ATALCENVKG SARGKMFPPS CLNSACR* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 5.0e-70 | 4 | 354 | 358 | + polygalacturonase | ||
| PLN02155 | PLN02155 | 8.0e-74 | 5 | 353 | 356 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 2.0e-80 | 4 | 354 | 361 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-86 | 14 | 342 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 2.0e-104 | 4 | 351 | 352 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD50028.1 | 0 | 38 | 352 | 51 | 368 | AC007651_23 Similar to polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_173158.1 | 0 | 5 | 352 | 51 | 401 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_175003.1 | 0 | 5 | 353 | 49 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_179147.1 | 0 | 5 | 353 | 49 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_179148.1 | 0 | 5 | 348 | 49 | 399 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 2e-19 | 83 | 342 | 80 | 334 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-19 | 83 | 342 | 80 | 334 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-19 | 83 | 342 | 80 | 334 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-19 | 83 | 342 | 80 | 334 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 2e-19 | 83 | 342 | 80 | 334 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FD533829 | 216 | 139 | 353 | 0 |
| EX751911 | 217 | 138 | 353 | 0 |
| FD953219 | 181 | 174 | 353 | 0 |
| EX088249 | 147 | 130 | 276 | 0 |
| EX088249 | 77 | 278 | 353 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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