| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra026221 |
| Family | PL1 |
| Protein Properties | Length: 459 Molecular Weight: 51477.8 Isoelectric Point: 9.7778 |
| Chromosome | Chromosome/Scaffold: 06 Start: 5507983 End: 5509696 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 173 | 371 | 0 |
| IIFARSMVIKLQQELMMTSDKTIDGRGARVYIMGGSGLTLQFVNNVIIHNIYIKQIVPANGGLIRDSEQHIGLRTRSDGDGINLFGATNVWIDHVSMTRC SDGMIDAILGSTAVTVSNSHFTDHQEVMLFGANDKHEIDKKMQITVAFNHFGKRLEQRMPRVRFGTIHVVNNDYTHWEMYAIGGNMNPTIISHGNRFIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 459 Download |
| MAAAFLNIGS YIFVFLLSSL ATLAPQVQAN IAVFDDYWTQ RQGDALKQTL ASFDPYPLNV 60 TNHLNYHVAL ALDTTESTNS TRRELSQARR GRKMQNRGKC VAHNPIDKCW RCDRDWEKNR 120 KKLAVCALGF GRRTTGGKDG PIYVVTDASD DELISPRPGT LRHAVTRDGP LWIIFARSMV 180 IKLQQELMMT SDKTIDGRGA RVYIMGGSGL TLQFVNNVII HNIYIKQIVP ANGGLIRDSE 240 QHIGLRTRSD GDGINLFGAT NVWIDHVSMT RCSDGMIDAI LGSTAVTVSN SHFTDHQEVM 300 LFGANDKHEI DKKMQITVAF NHFGKRLEQR MPRVRFGTIH VVNNDYTHWE MYAIGGNMNP 360 TIISHGNRFI APPNEQAKQI TKREYTSYVD WKLWNWQSEG DYFLNGAYFV QSGKPNAWSP 420 KPKNPIPNKF AIRPKPGTMV RKLTMDAGVL GCKQGQAC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam04431 | Pec_lyase_N | 5.0e-20 | 30 | 85 | 56 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
| COG3866 | PelB | 3.0e-28 | 134 | 422 | 309 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 4.0e-65 | 184 | 369 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 4.0e-77 | 179 | 373 | 206 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAB69759.1 | 0 | 1 | 458 | 1 | 459 | putative pectate lyase [Arabidopsis thaliana] |
| EMBL | CAN79927.1 | 0 | 22 | 458 | 19 | 439 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI22159.1 | 0 | 22 | 458 | 48 | 468 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_172894.1 | 0 | 1 | 458 | 1 | 459 | AT59; lyase/ pectate lyase [Arabidopsis thaliana] |
| RefSeq | NP_178375.1 | 0 | 5 | 458 | 1 | 455 | pectate lyase family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 104 | 450 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 104 | 450 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-23 | 134 | 360 | 21 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1jta_A | 3e-17 | 182 | 448 | 78 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1jrg_B | 3e-17 | 182 | 448 | 78 | 357 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
