| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra026230 |
| Family | GH14 |
| Protein Properties | Length: 550 Molecular Weight: 61721.6 Isoelectric Point: 7.8693 |
| Chromosome | Chromosome/Scaffold: 01 Start: 10498940 End: 10500828 |
| Description | chloroplast beta-amylase |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH14 | 89 | 503 | 0 |
| FVMLPLDTVTMSGHLNKPRAMNASLMALKGAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELIQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLEE ISKNPDLVYTDKSGRRNPEYISLGCDSVPVLRGRTPIQVYSDFMRSFRERFDHYIGGVIAEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMR SSLQAYAESVGKTNWGTSGPHDAGEYKNLPEDTEFFRRDGTWNSEYGKFFMEWYSGKLLEHGDKLLASAKGVFQGTGAKLSGKVAGIHWHYNTRSHAAEL TAGYYNTRNHDGYLPIAKMFNKHGVVLNFTCMEMKDGEQPEHANCSPEGLVKQVQSATRQAGTDLAGENALERYDSSAFGQVVATNRSDTGNGLTAFTYL RMNKRLFEGQNWQQL | |||
| Full Sequence |
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| Protein Sequence Length: 550 Download |
| MELTLNSSSS LIKRKDTKSS RNHESSSNMS FAKMKPPTYQ FQAKSSVKEM KFTHEKTFKP 60 EGEEATERWE KLHVLSYPHP KNDSSVPVFV MLPLDTVTMS GHLNKPRAMN ASLMALKGAG 120 VEGVMVDAWW GLVEKDGPMK YNWEGYAELI QMVQKHGLKL QVVMSFHQCG GNVGDSCSIP 180 LPPWVLEEIS KNPDLVYTDK SGRRNPEYIS LGCDSVPVLR GRTPIQVYSD FMRSFRERFD 240 HYIGGVIAEI QVGMGPCGEL RYPSYPESNG TWRFPGIGEF QCYDKYMRSS LQAYAESVGK 300 TNWGTSGPHD AGEYKNLPED TEFFRRDGTW NSEYGKFFME WYSGKLLEHG DKLLASAKGV 360 FQGTGAKLSG KVAGIHWHYN TRSHAAELTA GYYNTRNHDG YLPIAKMFNK HGVVLNFTCM 420 EMKDGEQPEH ANCSPEGLVK QVQSATRQAG TDLAGENALE RYDSSAFGQV VATNRSDTGN 480 GLTAFTYLRM NKRLFEGQNW QQLVEFVKKM KEGGGDGRRR QLSEEDTTGS DLYVGFVRKS 540 RKVEEASLV* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02905 | PLN02905 | 2.0e-149 | 86 | 510 | 432 | + beta-amylase | ||
| PLN02803 | PLN02803 | 0 | 1 | 549 | 552 | + beta-amylase | ||
| PLN00197 | PLN00197 | 0 | 86 | 548 | 470 | + beta-amylase; Provisional | ||
| pfam01373 | Glyco_hydro_14 | 0 | 89 | 506 | 431 | + Glycosyl hydrolase family 14. This family are beta amylases. | ||
| PLN02801 | PLN02801 | 0 | 86 | 510 | 433 | + beta-amylase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000272 | polysaccharide catabolic process |
| GO:0016161 | beta-amylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB46051.1 | 0 | 50 | 549 | 1 | 498 | putative beta-amylase [Arabidopsis thaliana] |
| EMBL | CAN62440.1 | 0 | 1 | 549 | 1 | 543 | hypothetical protein [Vitis vinifera] |
| RefSeq | NP_567523.1 | 0 | 1 | 549 | 1 | 548 | CT-BMY (CHLOROPLAST BETA-AMYLASE); beta-amylase [Arabidopsis thaliana] |
| RefSeq | XP_002282871.1 | 0 | 1 | 549 | 1 | 543 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002326690.1 | 0 | 1 | 549 | 1 | 547 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1wdp_A | 0 | 86 | 510 | 12 | 441 | B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor |
| PDB | 1q6c_A | 0 | 86 | 510 | 12 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
| PDB | 1bfn_A | 0 | 86 | 510 | 12 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
| PDB | 1uko_D | 0 | 86 | 510 | 12 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| PDB | 1uko_C | 0 | 86 | 510 | 12 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| BU103692 | 457 | 86 | 542 | 0 |
| HO794833 | 419 | 124 | 542 | 0 |
| HO781538 | 404 | 31 | 433 | 0 |
| HO825836 | 388 | 160 | 547 | 0 |
| DV161367 | 302 | 120 | 421 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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