| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra026583 |
| Family | PL1 |
| Protein Properties | Length: 458 Molecular Weight: 51317.6 Isoelectric Point: 9.9285 |
| Chromosome | Chromosome/Scaffold: 02 Start: 20419630 End: 20421744 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 172 | 370 | 0 |
| IIFARTMVIKLQQELMITNDKTIDGRGVSVYITGGAGFTLQFVKNVIIHNIHMKFIKRGFGGLIRDSEEHFGLRTISDGDGINIFGATNIWIDHVSMRNC SDGMIDAIMGSTAITISNSHFTDHKEVMLFGAKNGDEFDKKMQITVAFNHFGKRLNQRMPRVRYGMVHVVNNDYTHWEMYAIGGNMNPTIISQGNRFIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 458 Download |
| MAFAYLNLGS YVIVFVSLSI AIVAPSVQAH IAVFDDYWTQ RQANALRQTM ESYEPNPLNV 60 TNHFNYHAAL AMETTGADNG TRRELGQVKA GQKARGGRFK SLNAIDRCWR GDKNWAKNRK 120 KLADCVLGFG LKTTGGKNGP IYVVTDASDD DLLSPKPGTL RHAVTRDRPL WIIFARTMVI 180 KLQQELMITN DKTIDGRGVS VYITGGAGFT LQFVKNVIIH NIHMKFIKRG FGGLIRDSEE 240 HFGLRTISDG DGINIFGATN IWIDHVSMRN CSDGMIDAIM GSTAITISNS HFTDHKEVML 300 FGAKNGDEFD KKMQITVAFN HFGKRLNQRM PRVRYGMVHV VNNDYTHWEM YAIGGNMNPT 360 IISQGNRFIA PPKEDCKQVT KREYTAYPEW KSWNWQSERD YFLNGAYFVQ SGKSNAWSAA 420 PKNPIPKEFT IRPQPGTKVR SLTKDAGTLD CRPGKSC* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| pfam04431 | Pec_lyase_N | 2.0e-20 | 30 | 85 | 56 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. |
| COG3866 | PelB | 7.0e-31 | 133 | 368 | 248 | + Pectate lyase [Carbohydrate transport and metabolism] |
| pfam00544 | Pec_lyase_C | 4.0e-64 | 183 | 368 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
| smart00656 | Amb_all | 2.0e-75 | 178 | 372 | 206 | + Amb_all domain. |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAB69759.1 | 0 | 1 | 457 | 1 | 459 | putative pectate lyase [Arabidopsis thaliana] |
| EMBL | CAN79927.1 | 0 | 22 | 457 | 19 | 439 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI22159.1 | 0 | 22 | 457 | 48 | 468 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_172894.1 | 0 | 1 | 457 | 1 | 459 | AT59; lyase/ pectate lyase [Arabidopsis thaliana] |
| RefSeq | NP_178375.1 | 0 | 6 | 457 | 2 | 455 | pectate lyase family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 103 | 449 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 103 | 449 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 3e-22 | 133 | 359 | 21 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_B | 7e-16 | 173 | 448 | 85 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_A | 7e-16 | 173 | 448 | 85 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
