| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra026831 |
| Family | AA5 |
| Protein Properties | Length: 560 Molecular Weight: 62354.9 Isoelectric Point: 9.5566 |
| Chromosome | Chromosome/Scaffold: 09 Start: 33913203 End: 33914882 |
| Description | glyoxal oxidase-related protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA5 | 39 | 559 | 0 |
| GGRWDLLQPSIGISAMHMQLLHNNKVVIFDRTDYGPSNLSLPSQTCRNATVFDCSAHSLLYDVASNTFRPLTLRSDTWCSSGSLNASGSLIQTGGYGVGE RVVRIFTPCDGVSCDWVENRAYLSSRRWYSTNQILPDGRIIIVGGRRAFTYEFYPKNPGKSVFILRFLAETRDPNEENNLYPFLHLLPDGNLFIFANRRS ILFDFVNHRIVKEFPVIPGGDKRNYPSTGSSVLLPLSLTGENNRSKIAAEVMVCGGAPPGAFLKAARTIPKVFVGASRTCGRLKVTDPNPSWVMEQMPAP RVMPDMLLLPNGDILIINGASNGTAGWEDATNAVLNPILYMPDEPDPTRRFEILAPTRIPRMYHSASLLLADGRVLIGGSNPHRNYNFTARHYPTELSLE AYLPRYLDPQYSGVRPSIVTVELAGNMLYGKSFAVTFVIPAFGMFDGRVSVRLVAPSFSTHSTAMNQRMLVLRVRRVVQLSVFAYKADVDGPTNSYVAPP GYYMMFMVHRGTPSVAIWVKV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 560 Download |
| MKEGRFKKNL YAVFFTFFFF FCSTSDLLLP RSPLEMLTGG RWDLLQPSIG ISAMHMQLLH 60 NNKVVIFDRT DYGPSNLSLP SQTCRNATVF DCSAHSLLYD VASNTFRPLT LRSDTWCSSG 120 SLNASGSLIQ TGGYGVGERV VRIFTPCDGV SCDWVENRAY LSSRRWYSTN QILPDGRIII 180 VGGRRAFTYE FYPKNPGKSV FILRFLAETR DPNEENNLYP FLHLLPDGNL FIFANRRSIL 240 FDFVNHRIVK EFPVIPGGDK RNYPSTGSSV LLPLSLTGEN NRSKIAAEVM VCGGAPPGAF 300 LKAARTIPKV FVGASRTCGR LKVTDPNPSW VMEQMPAPRV MPDMLLLPNG DILIINGASN 360 GTAGWEDATN AVLNPILYMP DEPDPTRRFE ILAPTRIPRM YHSASLLLAD GRVLIGGSNP 420 HRNYNFTARH YPTELSLEAY LPRYLDPQYS GVRPSIVTVE LAGNMLYGKS FAVTFVIPAF 480 GMFDGRVSVR LVAPSFSTHS TAMNQRMLVL RVRRVVQLSV FAYKADVDGP TNSYVAPPGY 540 YMMFMVHRGT PSVAIWVKV* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam09118 | DUF1929 | 1.0e-20 | 453 | 559 | 108 | + Domain of unknown function (DUF1929). Members of this family adopt a secondary structure consisting of a bundle of seven, mostly antiparallel, beta-strands surrounding a hydrophobic core. The 7 strands are arranged in 2 sheets, in a Greek-key topology. Their precise function, has not, as yet, been defined, though they are mostly found in sugar-utilising enzymes, such as galactose oxidase. | ||
| cd02851 | E_set_GO_C | 3.0e-23 | 449 | 559 | 112 | + C-terminal Early set domain associated with the catalytic domain of galactose oxidase. E or "early" set domains are associated with the catalytic domain of galactose oxidase at the C-terminal end. Galactose oxidase is an extracellular monomeric enzyme which catalyzes the stereospecific oxidation of a broad range of primary alcohol substrates and possesses a unique mononuclear copper site essential for catalyzing a two-electron transfer reaction during the oxidation of primary alcohols to corresponding aldehydes. The second redox active center necessary for the reaction was found to be situated at a tyrosine residue. The C-terminal domain of galactose oxidase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase, among others. | ||
| pfam07250 | Glyoxal_oxid_N | 5.0e-133 | 54 | 294 | 248 | + Glyoxal oxidase N-terminus. This family represents the N-terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyzes the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF43943.1 | 0 | 1 | 559 | 1 | 564 | AC012188_20 Weak similarity to glyoxal oxidase (glx2) from Phanerochaete chrysosporium gb |
| RefSeq | NP_172895.1 | 0 | 1 | 556 | 1 | 561 | glyoxal oxidase-related [Arabidopsis thaliana] |
| RefSeq | XP_002269734.1 | 0 | 39 | 559 | 347 | 873 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002312784.1 | 0 | 32 | 559 | 12 | 543 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002520142.1 | 0 | 19 | 559 | 20 | 566 | conserved hypothetical protein [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2eic_A | 0.0000000000001 | 112 | 559 | 223 | 637 | A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f |
| PDB | 2wq8_A | 0.0000000000002 | 112 | 559 | 245 | 659 | A Chain A, Glycan Labelling Using Engineered Variants Of Galactose Oxidase Obtained By Directed Evolution |
| PDB | 1t2x_A | 0.0000000000005 | 112 | 559 | 223 | 637 | A Chain A, Glactose Oxidase C383s Mutant Identified By Directed Evolution |
| PDB | 2vz3_A | 0.0000000000007 | 112 | 559 | 223 | 637 | A Chain A, Glactose Oxidase C383s Mutant Identified By Directed Evolution |
| PDB | 2vz1_A | 0.0000000000007 | 112 | 559 | 223 | 637 | A Chain A, Glactose Oxidase C383s Mutant Identified By Directed Evolution |
