| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra026832 |
| Family | PL1 |
| Protein Properties | Length: 453 Molecular Weight: 50388.2 Isoelectric Point: 7.8144 |
| Chromosome | Chromosome/Scaffold: 09 Start: 33916179 End: 33917995 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 167 | 365 | 0 |
| IIFANSMVIKLQQELMITSNKTIDGRGAKVYIMEGVGLTLQFVNNVIINNIYVKHIIPGNGGLIRDSEEHVGIRTKSDGDGISLFGATNVWIDHVSMTRC TDGMIDAIEGSTAVTISNSHFTDHQEVMLFGAKDEHVIDKNMQITVAFNHFGKRLEQRMPRCRFGTIHVVNNDYTHWEMYAIGGNMNPTIISQGNRFIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 453 Download |
| MAAAFLNIGG YTLVFLLAIL VPHVQSNVAV FDNYWTQRQG DALKQTIASY DPNPLNVTDH 60 LNYHVALAVD ATESTNNTRR ELIGRKTQEG SGKCIAYNPI DKCWRCDPNW EKNRKKLAEC 120 VLGFGRKTTG GKDGPIYVVN DSSDDDLVNP KPGTLRHAVT RDGPLWIIFA NSMVIKLQQE 180 LMITSNKTID GRGAKVYIME GVGLTLQFVN NVIINNIYVK HIIPGNGGLI RDSEEHVGIR 240 TKSDGDGISL FGATNVWIDH VSMTRCTDGM IDAIEGSTAV TISNSHFTDH QEVMLFGAKD 300 EHVIDKNMQI TVAFNHFGKR LEQRMPRCRF GTIHVVNNDY THWEMYAIGG NMNPTIISQG 360 NRFIAPPNEQ AKEVTKREYT SYTDWKSWNW QSEGDYFLNG AYFVQSGRPN AWSPKPKNPV 420 PSKFAIRPKP GTMVRELTMD AGALGCEAGK AC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam04431 | Pec_lyase_N | 4.0e-19 | 27 | 82 | 56 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
| COG3866 | PelB | 2.0e-20 | 128 | 363 | 249 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 8.0e-58 | 178 | 363 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-68 | 173 | 367 | 206 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAB69759.1 | 0 | 1 | 452 | 1 | 459 | putative pectate lyase [Arabidopsis thaliana] |
| RefSeq | NP_172894.1 | 0 | 1 | 452 | 1 | 459 | AT59; lyase/ pectate lyase [Arabidopsis thaliana] |
| RefSeq | NP_178375.1 | 0 | 5 | 452 | 1 | 455 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002311599.1 | 0 | 13 | 452 | 1 | 429 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002520133.1 | 0 | 11 | 452 | 11 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 98 | 444 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 98 | 444 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-20 | 128 | 354 | 21 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 2e-16 | 181 | 363 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pe9_B | 7e-16 | 176 | 443 | 78 | 358 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
