| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra026880 |
| Family | CBM43 |
| Protein Properties | Length: 180 Molecular Weight: 18243.6 Isoelectric Point: 7.1152 |
| Chromosome | Chromosome/Scaffold: 09 Start: 34090114 End: 34090880 |
| Description | Carbohydrate-binding X8 domain superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 22 | 99 | 6.6e-28 |
| CLCKDGIGDNGLQTSIDYACGTLADCNPIHDKGACYQPNTIKNHCDWAVNSYFQKAAQVPGSCNFSGTATTSQTPPSN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 180 Download |
| MRMFLGVLLL LALTTSSSAI YCLCKDGIGD NGLQTSIDYA CGTLADCNPI HDKGACYQPN 60 TIKNHCDWAV NSYFQKAAQV PGSCNFSGTA TTSQTPPSNL VTGCIYPSSA SSAGSPPSTT 120 PPTGTTPTTN GTGGFTPFPG TPPAFGPTGT GGFTPSKAAS SLVISSVFTL CFSSLAFLM* 180 240 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 3.0e-15 | 21 | 91 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 3.0e-27 | 21 | 106 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF79417.1 | 0 | 19 | 178 | 76 | 245 | AC068197_27 F16A14.5 [Arabidopsis thaliana] |
| GenBank | ACU14053.1 | 9.99967e-42 | 1 | 115 | 1 | 114 | unknown [Glycine max] |
| GenBank | ACU20773.1 | 6.99949e-42 | 1 | 115 | 1 | 114 | unknown [Glycine max] |
| RefSeq | NP_172838.2 | 0 | 19 | 179 | 19 | 186 | beta-1,3-glucanase-related [Arabidopsis thaliana] |
| RefSeq | NP_671770.1 | 0 | 1 | 156 | 1 | 143 | glycosyl hydrolase family protein 17 [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jon_A | 4e-16 | 14 | 111 | 6 | 101 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
