| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra026925 |
| Family | GH5 |
| Protein Properties | Length: 400 Molecular Weight: 44390.6 Isoelectric Point: 7.5924 |
| Chromosome | Chromosome/Scaffold: 09 Start: 34346066 End: 34347732 |
| Description | Cellulase (glycosyl hydrolase family 5) protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH5 | 26 | 224 | 8e-27 |
| LDNHLTKPGWCCANNDGNGFFGDKFFDPTVWTAALSKMAATFNGVSNVVGMSLRNELRGTKQNVNDWFKYMQQGAEAVHSANKNVLVIMSGLSFDTDLSF LMPRPVHLSFTGKLVFELHWYSFSDGNSWSTNNSNDNCGQVLNRIRNNGGFLLNQGFPLFLSEIGIDERGGNVNDDRYFGCLTGWAAKNDVDWSLWALT | |||
| Full Sequence |
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| Protein Sequence Length: 400 Download |
| MSIMISTLFI FADGGYKIGK AQCDGLDNHL TKPGWCCANN DGNGFFGDKF FDPTVWTAAL 60 SKMAATFNGV SNVVGMSLRN ELRGTKQNVN DWFKYMQQGA EAVHSANKNV LVIMSGLSFD 120 TDLSFLMPRP VHLSFTGKLV FELHWYSFSD GNSWSTNNSN DNCGQVLNRI RNNGGFLLNQ 180 GFPLFLSEIG IDERGGNVND DRYFGCLTGW AAKNDVDWSL WALTGTYYLR LGVVGLNEYY 240 GVLDSDWISV RNSSFLQKIY LLQSTLQGPG PRTDAYNLVF HPLTGLCLVC SLKDTAMLTL 300 VTDQKIGLPC LGRVVRESRW QTISASRMHL ALTTSKNNSL CLDVDATNNI LANPCKCLSK 360 DSSCQPMSQW FKIINATRPL ESSKLYKQLE NLSPRSDML* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00150 | Cellulase | 9.0e-10 | 54 | 225 | 181 | + Cellulase (glycosyl hydrolase family 5). | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD31066.1 | 0 | 26 | 392 | 127 | 521 | AC007357_15 F3F19.15 [Arabidopsis thaliana] |
| RefSeq | NP_172772.2 | 0 | 26 | 392 | 157 | 551 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
| RefSeq | NP_189245.1 | 0 | 26 | 378 | 127 | 508 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002315653.1 | 0 | 26 | 385 | 126 | 513 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515055.1 | 0 | 26 | 384 | 155 | 541 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1vrx_B | 0.00005 | 54 | 190 | 135 | 284 | A Chain A, Endocellulase E1 From Acidothermus Cellulolyticus Mutant Y245g |
| PDB | 1vrx_A | 0.00005 | 54 | 190 | 135 | 284 | A Chain A, Endocellulase E1 From Acidothermus Cellulolyticus Mutant Y245g |
| PDB | 1ece_B | 0.0004 | 54 | 190 | 135 | 284 | A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic Domain In Complex With A Cellotetraose |
| PDB | 1ece_A | 0.0004 | 54 | 190 | 135 | 284 | A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic Domain In Complex With A Cellotetraose |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DK465433 | 266 | 26 | 291 | 0 |
| EV035501 | 224 | 77 | 300 | 0 |
| DK525050 | 228 | 197 | 400 | 0 |
| DK525050 | 19 | 177 | 195 | 0.48 |
| DK465433 | 19 | 7 | 25 | 1.6 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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