| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra027148 |
| Family | GH28 |
| Protein Properties | Length: 537 Molecular Weight: 58540.6 Isoelectric Point: 6.8352 |
| Chromosome | Chromosome/Scaffold: 09 Start: 8798013 End: 8800449 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 144 | 489 | 0 |
| ASACKVEASTMVIPPDYIFLVGPISFSGPYCQANIVFQLDGMIVAPTDSESWGRGLLWWIEFTKLKGITIQGNGVIDGRGTGWWQQDNPFDYPIDDDFKL IVPLNNTVQERPPMPIRSELNGMPSIKPTALRFYGSIDVTVTGITIQNSPQCHLKFDNCVQVLVHDVTVSSPGDSPNTDGIHLQNTRDVMIHTSTLACGD DCISIQTGCSNVYVHNVNCGPGHGISIGSLGKDSTKACVSNITVRDVVMHNTMTGVRIKTWQGGVGSVKGVLFSNIQLTEVQLPIVIDQFYCDHSKCKNQ SSAVSVEGVTYENIRGTYTVKPVHFACSDSFPCVDVQLSGIELKPV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 537 Download |
| MITRESQRLS SVTIMILMVT LVWSVTLQTC IARKGRHWRH HHSSSSSSST LSDSLSSKKP 60 KSHHNSHSHK SKPQLKTPPP KSGSPVLPQP PQVQPPPSPQ VQPPPPSPLP LQPLEGSQEF 120 NVLDFGAKGD GMSDDTEAFE AAWASACKVE ASTMVIPPDY IFLVGPISFS GPYCQANIVF 180 QLDGMIVAPT DSESWGRGLL WWIEFTKLKG ITIQGNGVID GRGTGWWQQD NPFDYPIDDD 240 FKLIVPLNNT VQERPPMPIR SELNGMPSIK PTALRFYGSI DVTVTGITIQ NSPQCHLKFD 300 NCVQVLVHDV TVSSPGDSPN TDGIHLQNTR DVMIHTSTLA CGDDCISIQT GCSNVYVHNV 360 NCGPGHGISI GSLGKDSTKA CVSNITVRDV VMHNTMTGVR IKTWQGGVGS VKGVLFSNIQ 420 LTEVQLPIVI DQFYCDHSKC KNQSSAVSVE GVTYENIRGT YTVKPVHFAC SDSFPCVDVQ 480 LSGIELKPVQ LQYHMYDPFC WKAFGLLNSP TVPPIDCLQI GKPARNGVHT DHDVCV* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 2.0e-78 | 116 | 487 | 378 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-80 | 151 | 486 | 337 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03010 | PLN03010 | 1.0e-81 | 118 | 486 | 374 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 8.0e-89 | 114 | 487 | 378 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-105 | 120 | 514 | 402 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF17670.1 | 0 | 1 | 535 | 1 | 542 | AC009398_19 F20B24.8 [Arabidopsis thaliana] |
| GenBank | AAL31197.1 | 0 | 66 | 536 | 2 | 474 | At1g60590/F8A5_12 [Arabidopsis thaliana] |
| RefSeq | NP_563875.6 | 0 | 1 | 535 | 1 | 532 | polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_564758.2 | 0 | 1 | 536 | 1 | 540 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002266600.1 | 0 | 9 | 535 | 6 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 1e-20 | 211 | 486 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 1e-20 | 211 | 486 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 1e-20 | 211 | 486 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 1e-20 | 211 | 486 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 1e-20 | 211 | 486 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
