| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra027200 |
| Family | GT4 |
| Protein Properties | Length: 553 Molecular Weight: 62037.2 Isoelectric Point: 10.7334 |
| Chromosome | Chromosome/Scaffold: 05 Start: 19652525 End: 19654430 |
| Description | UDP-Glycosyltransferase superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT4 | 386 | 519 | 4.5e-23 |
| SANVTQKQDLKLLLGSVGSKSNKVAYVKEMLNFLSKNGNLSNSVVWTLATTRVASLYSAADVYVTNSQGIGETFGRVTIEAMAYGLPVLGTDAGGTKEIV EHNVTGLLHPVGRPGNKVLAQNLLFLLRNPSTRL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 553 Download |
| MHVALAKKED ATPRRSLSAR RRRRRKAGRS SRSKTQKVRK VVEDLDEQDP ELPKTNVTYG 60 KLFGPFGSIE DRILEWSPQK RSGTCDRNSD FKRLVWSRRF VLLFHELSMT GAPISMMELA 120 SELLSCGATV YAVVLSRRGG LLQELIRRRI KVVEDKGELS FKTAMKADLV VAGSAVCATW 180 IDQYMDHFPA GGSQIAWWVM ENRREYFDRA KPVLDRVKLL IFLSEVQNKQ WLTWCEEERI 240 KLRSQPVIVP LSVNDELAFV AGISSSLNTP TLTTEMMKAK RQALRESVRK EFGLTDKDML 300 VMSLSSINPT KGQLLLLESA ALALEKEKEP EQVAKSNHIS GTKKEKISLS VRHRLRGSAR 360 KMKIKSRVVD NPSVLSATGK RKLLFSANVT QKQDLKLLLG SVGSKSNKVA YVKEMLNFLS 420 KNGNLSNSVV WTLATTRVAS LYSAADVYVT NSQGIGETFG RVTIEAMAYG LPVLGTDAGG 480 TKEIVEHNVT GLLHPVGRPG NKVLAQNLLF LLRNPSTRLQ LGSEGRKKVE KMYMKQHMYK 540 RFVDVLVKCM RP* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd03798 | GT1_wlbH_like | 7.0e-20 | 437 | 549 | 113 | + This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS. | ||
| cd03825 | GT1_wcfI_like | 4.0e-20 | 436 | 533 | 98 | + This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis. | ||
| TIGR00009 | L28 | 1.0e-20 | 429 | 551 | 125 | + ribosomal protein L28. This model describes bacterial and chloroplast forms of the 50S ribosomal protein L28, a polypeptide about 60 amino acids in length. Mitochondrial homologs differ substantially in architecture and are not included [Protein synthesis, Ribosomal proteins: synthesis and modification]. | ||
| cd03808 | GT1_cap1E_like | 6.0e-24 | 424 | 544 | 121 | + This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides. | ||
| cd03801 | GT1_YqgM_like | 2.0e-27 | 424 | 546 | 125 | + This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_175651.1 | 0 | 3 | 552 | 133 | 670 | glycosyl transferase family 1 protein [Arabidopsis thaliana] |
| RefSeq | NP_188215.1 | 0 | 1 | 552 | 135 | 697 | glycosyl transferase family 1 protein [Arabidopsis thaliana] |
| RefSeq | XP_002284822.1 | 0 | 1 | 551 | 135 | 689 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002298139.1 | 0 | 49 | 551 | 200 | 679 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002528176.1 | 0 | 3 | 551 | 148 | 684 | glycosyltransferase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jjm_L | 0.000000009 | 387 | 551 | 234 | 387 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
| PDB | 2jjm_K | 0.000000009 | 387 | 551 | 234 | 387 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
| PDB | 2jjm_J | 0.000000009 | 387 | 551 | 234 | 387 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
| PDB | 2jjm_I | 0.000000009 | 387 | 551 | 234 | 387 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
| PDB | 2jjm_H | 0.000000009 | 387 | 551 | 234 | 387 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FD987546 | 237 | 77 | 313 | 0 |
| HS064398 | 238 | 44 | 281 | 0 |
| FG565186 | 194 | 35 | 228 | 0 |
| EY809523 | 244 | 60 | 303 | 0 |
| FG147409 | 260 | 54 | 313 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
