| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra027210 |
| Family | GH28 |
| Protein Properties | Length: 457 Molecular Weight: 48820.2 Isoelectric Point: 5.1003 |
| Chromosome | Chromosome/Scaffold: 05 Start: 19726609 End: 19728695 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 48 | 378 | 0 |
| EDVCSGAGDGQLIIPAGMAFMLQPLKFEGSCKSTPIVVQILGNLVASSRGKWKGDKDQWILFSDIEGLVVEGNGEINGQGSSWWEHKGSSRPTALKFKSC NNLRLSGLTHVDSAMAHIHINGCNDVTISNLRINAPESSPNTDGIDVAVSSNVIIQDCVIATGDDCIAINSGTANIRISGIDCGPGHGISIGSLGKDGEI ASVEDVCVQNCNFRGTMNGARIKTWPGGSGYARRITFNGITLDNVENPIIIDQHYNNGDSDKSTDDKSSAVEVSKVVYSNFVGTSRSEYGVNFRCSTRVP CTEIFLKDVKIETASSGMGQVAQGQCLNVRG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 457 Download |
| MQKKTSILIF SVFILQIFTY SKALDVTQYG AVGDGVTDDS QAFLKAWEDV CSGAGDGQLI 60 IPAGMAFMLQ PLKFEGSCKS TPIVVQILGN LVASSRGKWK GDKDQWILFS DIEGLVVEGN 120 GEINGQGSSW WEHKGSSRPT ALKFKSCNNL RLSGLTHVDS AMAHIHINGC NDVTISNLRI 180 NAPESSPNTD GIDVAVSSNV IIQDCVIATG DDCIAINSGT ANIRISGIDC GPGHGISIGS 240 LGKDGEIASV EDVCVQNCNF RGTMNGARIK TWPGGSGYAR RITFNGITLD NVENPIIIDQ 300 HYNNGDSDKS TDDKSSAVEV SKVVYSNFVG TSRSEYGVNF RCSTRVPCTE IFLKDVKIET 360 ASSGMGQVAQ GQCLNVRGGV STLAVPGLEC LALSTDMLSW GTMPEQACML PQQSVQPNTR 420 PLQDPLWVYG SRGERLGVYR VVLTSLISFG FSYVLG* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-88 | 51 | 359 | 315 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 4.0e-90 | 1 | 359 | 369 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 6.0e-97 | 22 | 398 | 387 | + Probable polygalacturonase | ||
| PLN03010 | PLN03010 | 4.0e-116 | 4 | 381 | 381 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 0 | 1 | 456 | 459 | + Probable polygalacturonase At3g15720 | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABC75354.1 | 0 | 24 | 391 | 23 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| RefSeq | NP_001078162.1 | 0 | 3 | 456 | 2 | 451 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_195292.2 | 0 | 1 | 368 | 1 | 369 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_566524.1 | 0 | 1 | 456 | 1 | 455 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002266543.1 | 0 | 25 | 391 | 21 | 374 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 3e-23 | 59 | 335 | 26 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 3e-23 | 59 | 335 | 26 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 3e-23 | 59 | 335 | 26 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 3e-23 | 59 | 335 | 26 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 3e-23 | 59 | 335 | 26 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
