| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra027211 |
| Family | GH28 |
| Protein Properties | Length: 452 Molecular Weight: 48477.9 Isoelectric Point: 6.3022 |
| Chromosome | Chromosome/Scaffold: 05 Start: 19731607 End: 19733921 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 47 | 376 | 0 |
| WEAVCSGTGDGQLIVPAGMSFMLQPLKFQGSCKPTPIAVQILGTLVASSRGEWKGDKNQWILFSDIEGLVVDGNGKINGQGSSWWQHKGSRPTGLKFKNC NNLRLRGLTHVDSAMAHIHINGCNDVTISNLRINAPESSPNTDGIDIAASSNVVIQDCVIATGDDCIAINSGTANIRISGIDCGPGHGISIGSLGKDEGV ASVEDICVQNCNFRGTMNGARIKTWPGGSGYARRITFNGITLDNVENPIIIDQHYKHEDSDKSTDDKSSAVEVSKVVYSNFVGTSKSEYGVNFRCSERAP CTEIFMKDVKIKTASSGMGQVAQGQCLNVR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 452 Download |
| MQTKAWFLNF SVFILKIFAY SKALDVTQYG AFGDGVTDDS QAFLKAWEAV CSGTGDGQLI 60 VPAGMSFMLQ PLKFQGSCKP TPIAVQILGT LVASSRGEWK GDKNQWILFS DIEGLVVDGN 120 GKINGQGSSW WQHKGSRPTG LKFKNCNNLR LRGLTHVDSA MAHIHINGCN DVTISNLRIN 180 APESSPNTDG IDIAASSNVV IQDCVIATGD DCIAINSGTA NIRISGIDCG PGHGISIGSL 240 GKDEGVASVE DICVQNCNFR GTMNGARIKT WPGGSGYARR ITFNGITLDN VENPIIIDQH 300 YKHEDSDKST DDKSSAVEVS KVVYSNFVGT SKSEYGVNFR CSERAPCTEI FMKDVKIKTA 360 SSGMGQVAQG QCLNVRGGVT TLAVPGLECL ALSTDWGTLP EQACMLPQQS GQPDTRPSQD 420 PLWVIWVYGS GGKHLGVYSV VLTSLINLFW F* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 7.0e-91 | 1 | 376 | 399 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 7.0e-96 | 24 | 358 | 346 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 4.0e-97 | 22 | 357 | 347 | + Probable polygalacturonase | ||
| PLN03010 | PLN03010 | 5.0e-117 | 7 | 377 | 374 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 0 | 1 | 448 | 454 | + Probable polygalacturonase At3g15720 | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABC75354.1 | 0 | 24 | 390 | 23 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| RefSeq | NP_001078162.1 | 0 | 4 | 451 | 3 | 448 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_195292.2 | 0 | 7 | 367 | 10 | 369 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_566524.1 | 0 | 1 | 451 | 1 | 452 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002266543.1 | 0 | 25 | 390 | 21 | 374 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 5e-23 | 39 | 303 | 7 | 268 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 5e-23 | 39 | 303 | 7 | 268 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 5e-23 | 39 | 303 | 7 | 268 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 5e-23 | 39 | 303 | 7 | 268 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 5e-23 | 39 | 303 | 7 | 268 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
