| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra027350 |
| Family | CE8 |
| Protein Properties | Length: 593 Molecular Weight: 63743.5 Isoelectric Point: 9.1058 |
| Chromosome | Chromosome/Scaffold: 05 Start: 20472188 End: 20475154 |
| Description | pectin methylesterase 3 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 282 | 576 | 0 |
| ATVAADGSGTFTTISAAVAAAPENSNKRYVIHIKAGVYRENVDVAKKKKNIMFMGDGRTTTIITASRNVVDGSTTFHSATVAAVGERFLARDITFQNTAG PSKHQAVALRVGSDFSAFYQCDMLAYQDTLYVHSNRQFFVKCLIAGTVDFIFGNAAVVLQDCDIPARRPNSGQKNMVTAQGRTDPNQNTGIVIQKCRIGA TSDLQSVKSSFPTYLGRPWKEYSQTVIMQSAISDVIRPEGWSEWTGTFALNTLTYREYANTGTGAGTANRVTWKGFKVITAAAEAQPYTAGQFIG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 593 Download |
| MAPSIKEIFS KDNFKKNKKI VLLSAAVALL LVASVAGIAA GASKANENGK RTLSPTSHAV 60 LRSACSSTLY PELCISAVAT AGGVKLTSQK DVIEASLNLT TTAVEHNYFG VKKLIKKTKG 120 LTPREKTALH DCLETIDETL DELHEALEDL HMYPNKKSLR EHAGDLKTLI SSAITNQETC 180 LDGFSHDAAD KKVRKALLKG QMHVEHMCSN ALAMIKNMTD TDIANFELKA KLSSNNRKLK 240 EEETTVAVDI AGAGELGADG WPTWLSAGDR RLLQGSTVKA DATVAADGSG TFTTISAAVA 300 AAPENSNKRY VIHIKAGVYR ENVDVAKKKK NIMFMGDGRT TTIITASRNV VDGSTTFHSA 360 TVAAVGERFL ARDITFQNTA GPSKHQAVAL RVGSDFSAFY QCDMLAYQDT LYVHSNRQFF 420 VKCLIAGTVD FIFGNAAVVL QDCDIPARRP NSGQKNMVTA QGRTDPNQNT GIVIQKCRIG 480 ATSDLQSVKS SFPTYLGRPW KEYSQTVIMQ SAISDVIRPE GWSEWTGTFA LNTLTYREYA 540 NTGTGAGTAN RVTWKGFKVI TAAAEAQPYT AGQFIGGGGW LSSTGFPFSL GL* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02201 | PLN02201 | 7.0e-160 | 165 | 592 | 428 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02484 | PLN02484 | 3.0e-169 | 64 | 592 | 532 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02313 | PLN02313 | 0 | 1 | 592 | 597 | + Pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 0 | 281 | 577 | 297 | + Pectinesterase. | ||
| PLN02301 | PLN02301 | 0 | 52 | 592 | 549 | + pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC50023.1 | 0 | 7 | 592 | 1 | 582 | ATPME2 precursor [Arabidopsis thaliana] |
| GenBank | AAC72288.1 | 0 | 1 | 592 | 1 | 592 | putative pectin methylesterase [Arabidopsis thaliana] |
| EMBL | CAB95025.1 | 0 | 51 | 592 | 52 | 579 | pectin methylesterase [Nicotiana tabacum] |
| RefSeq | NP_175786.1 | 0 | 1 | 592 | 1 | 587 | ATPME2; pectinesterase [Arabidopsis thaliana] |
| RefSeq | NP_188048.1 | 0 | 1 | 592 | 1 | 592 | ATPME3; pectinesterase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 274 | 592 | 1 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 278 | 592 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1qjv_B | 2e-23 | 285 | 576 | 12 | 335 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 2e-23 | 285 | 576 | 12 | 335 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 3e-23 | 285 | 576 | 12 | 335 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
