| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra027403 |
| Family | GH35 |
| Protein Properties | Length: 840 Molecular Weight: 92837.4 Isoelectric Point: 8.3608 |
| Chromosome | Chromosome/Scaffold: 05 Start: 20725770 End: 20730172 |
| Description | beta galactosidase 1 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH35 | 34 | 336 | 0 |
| TINGERRILISGSIHYPRSTPEMWPDLIRKAKEGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFVKLVQQSGLYLHLRIGPYVCAEWNFGGFPVWLKY VPGISFRTDNGPFKAQMQRFTTKIVNMMKAERLFESQGGPIILSQIENEYGPMEYELGAPGRSYTNWAAKMAVGLGTGVPWVMCKQDDAPDPIINACNGF YCDYFSPNKAYKPKMWTEAWTGWFTKFGGPVPYRPAEDMAFSVARFIQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLERQPKWGHLKD LHR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 840 Download |
| MKNVAIAAAS ALFLLGFLVS SVSASVSYDS RAITINGERR ILISGSIHYP RSTPEMWPDL 60 IRKAKEGGLD VIQTYVFWNG HEPSPGKYYF EGNYDLVKFV KLVQQSGLYL HLRIGPYVCA 120 EWNFGGFPVW LKYVPGISFR TDNGPFKAQM QRFTTKIVNM MKAERLFESQ GGPIILSQIE 180 NEYGPMEYEL GAPGRSYTNW AAKMAVGLGT GVPWVMCKQD DAPDPIINAC NGFYCDYFSP 240 NKAYKPKMWT EAWTGWFTKF GGPVPYRPAE DMAFSVARFI QKGGSFINYY MYHGGTNFGR 300 TAGGPFIATS YDYDAPLDEY GLERQPKWGH LKDLHRAIKL CEPALVSGEP TRMSLGNYQE 360 AHVYKSKSGA CSAFLANYNP RSYAKVSFGS NHYNLPPWSI SILPDCKNTV YNTARVGAQT 420 SRMKMVEVPV HGGLSWQAYN EDPSTYIDES FTMVGLVEQI NTTRDTSDYL WYMTDVKIDS 480 NEGFLRTGDL PTLTVLSAGH AMHVFINGQL SGSAYGSLDS PKLTFRKGVN LRAGFNKIAI 540 LSIAVGLPNV GPHFETWNAG VLGPVNLNGL NGGRRDLSWQ KWTYKVGLRG ESLSLHSLGG 600 SSSVEWAEGA YVAQKQPLTW YKTTFSAPAG DSPLAVDMGS MGKGQIWING QSVGRHWPAY 660 KAVGSCGECS YTGTFNENKC LRNCGEASQR WYHVPRSWLK PTGNLLVVFE EWGGDPNGIS 720 LVRREVDSVC ADIYEWQSTL VNYQLHSSGK VNKPLHPKVH LQCGPGQKMT TVKFASFGTP 780 EGTCGSYRQG SCHAHHSYDA FNRLCVGQNW CSVTVAPEMF GGDPCPNVMK KLAVEAVCA* 840 900 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02449 | Glyco_hydro_42 | 3.0e-6 | 48 | 184 | 152 | + Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues. | ||
| pfam02140 | Gal_Lectin | 4.0e-21 | 761 | 838 | 82 | + Galactose binding lectin domain. | ||
| COG1874 | LacA | 3.0e-23 | 28 | 328 | 370 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
| pfam01301 | Glyco_hydro_35 | 2.0e-164 | 32 | 338 | 323 | + Glycosyl hydrolases family 35. | ||
| PLN03059 | PLN03059 | 0 | 28 | 839 | 813 | + beta-galactosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0004565 | beta-galactosidase activity |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009341 | beta-galactosidase complex |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM13196.1 | 0 | 23 | 839 | 31 | 847 | galactosidase, putative [Arabidopsis thaliana] |
| GenBank | ABK96254.1 | 0 | 21 | 839 | 28 | 846 | unknown [Populus trichocarpa x Populus deltoides] |
| RefSeq | NP_187988.1 | 0 | 23 | 839 | 31 | 847 | BGAL1 (Beta galactosidase 1); beta-galactosidase/ catalytic/ cation binding / heme binding / peroxidase/ sugar binding [Arabidopsis thaliana] |
| RefSeq | XP_002327432.1 | 0 | 21 | 839 | 21 | 839 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527409.1 | 0 | 1 | 839 | 6 | 845 | beta-galactosidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d3a_A | 0 | 35 | 334 | 17 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3d3a_A | 0.004 | 492 | 657 | 399 | 546 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_D | 5.99994e-41 | 25 | 408 | 10 | 405 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_C | 5.99994e-41 | 25 | 408 | 10 | 405 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
