| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra027421 |
| Family | CBM43 |
| Protein Properties | Length: 502 Molecular Weight: 53645.7 Isoelectric Point: 5.3395 |
| Chromosome | Chromosome/Scaffold: 05 Start: 20821411 End: 20823138 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 367 | 448 | 1.8e-30 |
| CVAKVDADDDKLEDGLNWACGQGRANCGPIQPGQACYLPNDIKSHASFAYNDYYQKMKGVGGTCDFDGTAITTPRDPSYRTC | |||
| GH17 | 26 | 345 | 0 |
| IGVNIGTDLTNMPSPSDIVSLLKSHQITHVRLYDANSHMLKALSNTTIQVTVGVTNQEILKIGRFPSSAASWVNKNVAAYVPSTNITAIAVGSEVLTESP HVAPILASALNNIHKALVATNLNFQVKVSTPMSMDVMPKPFPPSTSTFSPSWNTTVHQILQFLDNTGSFFMLNAYPYYGYTTANGIFPLDYALFKQLSAV KQIVDPNTLLHYDSMFDAMVDAAYYSMEALNFSKIPVVVTETGWPSSGGSDETAATVGNAETFNSNLIKRVLNNSGPPSKPDIPINTYIYELYNEDKRSG PESEKNWGMFYPNGTSVYPL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 502 Download |
| MLLPRWFLEA ILLLISALAF TNAAFIGVNI GTDLTNMPSP SDIVSLLKSH QITHVRLYDA 60 NSHMLKALSN TTIQVTVGVT NQEILKIGRF PSSAASWVNK NVAAYVPSTN ITAIAVGSEV 120 LTESPHVAPI LASALNNIHK ALVATNLNFQ VKVSTPMSMD VMPKPFPPST STFSPSWNTT 180 VHQILQFLDN TGSFFMLNAY PYYGYTTANG IFPLDYALFK QLSAVKQIVD PNTLLHYDSM 240 FDAMVDAAYY SMEALNFSKI PVVVTETGWP SSGGSDETAA TVGNAETFNS NLIKRVLNNS 300 GPPSKPDIPI NTYIYELYNE DKRSGPESEK NWGMFYPNGT SVYPLGLSGS GGGGGGSEAL 360 NGTTLFCVAK VDADDDKLED GLNWACGQGR ANCGPIQPGQ ACYLPNDIKS HASFAYNDYY 420 QKMKGVGGTC DFDGTAITTP RDPSYRTCAY TGSPNANGTG GNFPPALGPA SQVGGNANAV 480 FVSIYHLPFL ATLALTLLLV L* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 1.0e-7 | 38 | 338 | 318 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 9.0e-22 | 365 | 437 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 8.0e-37 | 365 | 450 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 1.0e-81 | 26 | 344 | 319 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB01763.1 | 0 | 37 | 489 | 1 | 450 | beta-1,3-glucanase-like protein [Arabidopsis thaliana] |
| DDBJ | BAH57260.1 | 0 | 1 | 444 | 1 | 440 | AT3G13560 [Arabidopsis thaliana] |
| EMBL | CAN72077.1 | 0 | 27 | 453 | 27 | 448 | hypothetical protein [Vitis vinifera] |
| RefSeq | NP_187965.1 | 0 | 1 | 489 | 1 | 486 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002283548.1 | 0 | 27 | 450 | 27 | 445 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 26 | 345 | 1 | 310 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur8_B | 0 | 26 | 348 | 3 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur8_A | 0 | 26 | 348 | 3 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur7_B | 0 | 26 | 348 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3ur7_A | 0 | 26 | 348 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
