| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra027552 |
| Family | AA7 |
| Protein Properties | Length: 342 Molecular Weight: 38941 Isoelectric Point: 9.0198 |
| Chromosome | Chromosome/Scaffold: 09 Start: 13402332 End: 13403357 |
| Description | FAD-binding Berberine family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| AA7 | 1 | 105 | 3.8e-33 |
| MRKYGLAADNVLDAKIVDANGKLLDRTAMGEDMFWAIRGGAGGSFGIILSWKIKLVPVPKTLTVFTVTKTLDQDPGFKILSKWQQVADKLVEDLLLRVFF TIAGN | |||
| Full Sequence |
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| Protein Sequence Length: 342 Download |
| MRKYGLAADN VLDAKIVDAN GKLLDRTAMG EDMFWAIRGG AGGSFGIILS WKIKLVPVPK 60 TLTVFTVTKT LDQDPGFKIL SKWQQVADKL VEDLLLRVFF TIAGNNENRT VAMSYIGQFL 120 GEKGNLMEVM HKDFPELGLT QEDCIEVNWI ESVIYNSGFP TSTPPPPEVL LQAKSPMGEV 180 YFKAKSDFAK EPIPILGLQG MIKKILEEEA ALMVWTPYGG MMDKIPESEI PFPHRSGTSF 240 MILYYRSWSD TEKRPDMRIK WIRELYNYMT PYVSSNPRQA YVNYRDLDLG QNSNNSRTSL 300 KQAQVWGAKY FKDNFNRLVK IKTKAHPENL FRHEQSVPLL Y* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG0277 | GlcD | 3.0e-7 | 2 | 340 | 350 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| pfam08031 | BBE | 1.0e-16 | 280 | 338 | 59 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL24314.1 | 0 | 1 | 340 | 201 | 540 | berberine bridge enzyme-like protein [Arabidopsis thaliana] |
| RefSeq | NP_199251.1 | 0 | 1 | 338 | 202 | 537 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
| RefSeq | NP_199252.1 | 0 | 1 | 340 | 201 | 540 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
| RefSeq | NP_199253.1 | 0 | 1 | 338 | 199 | 534 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
| RefSeq | XP_002523164.1 | 0 | 1 | 340 | 195 | 531 | Reticuline oxidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vte_A | 0 | 1 | 340 | 167 | 513 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
| PDB | 4dns_B | 0 | 1 | 340 | 170 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 4dns_A | 0 | 1 | 340 | 170 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_B | 0 | 1 | 340 | 168 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_A | 0 | 1 | 340 | 168 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| ES901827 | 241 | 1 | 241 | 0 |
| EV573730 | 242 | 101 | 342 | 0 |
| GR717229 | 192 | 151 | 342 | 0 |
| FD969472 | 202 | 141 | 342 | 0 |
| GR924372 | 301 | 1 | 301 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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