| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra027553 |
| Family | AA7 |
| Protein Properties | Length: 436 Molecular Weight: 48423.7 Isoelectric Point: 10.4899 |
| Chromosome | Chromosome/Scaffold: 09 Start: 13366579 End: 13385200 |
| Description | FAD-binding Berberine family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA7 | 77 | 307 | 0 |
| LRYLTKSMPKPGFIFKPLHESHVQASIICSKKLGTHVRVRSGGHDYEGLSYVSEIEKPFIVMDLSKLRKVNINIKDSATVTEKSRVHGFPAGLCSSLGIG GHVTGGAYGSMMRKYGLGADNVLDAKIVDANGKILDRKAMGEDTFWAIRGGAGRSFGIILEWKIKLVPVPKTVTVFTVTKTLQQDPGNKILSKWQMVADK LVDKLFIRVIFNVSANNGSKTAMTSYNAVFL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 436 Download |
| MGISKPSPAF SFLLIFALYF SFYTITPTTS SASLQDQFIN CLHKNTHVSF PLESTFFAPA 60 KNVSMFSEVL QSTAQNLRYL TKSMPKPGFI FKPLHESHVQ ASIICSKKLG THVRVRSGGH 120 DYEGLSYVSE IEKPFIVMDL SKLRKVNINI KDSATVTEKS RVHGFPAGLC SSLGIGGHVT 180 GGAYGSMMRK YGLGADNVLD AKIVDANGKI LDRKAMGEDT FWAIRGGAGR SFGIILEWKI 240 KLVPVPKTVT VFTVTKTLQQ DPGNKILSKW QMVADKLVDK LFIRVIFNVS ANNGSKTAMT 300 SYNAVFLGNK GMLKKVMNKS FPKLDLTPKD CTEMSWLESI VYISGFASRS PTKVLLQGKS 360 PFPKNNFKAK SDFMKKPIPE SGLKGIFKKL LKEDNPMMMW NPYGGMMAKI LESQIHFPHR 420 KGVIFKIQYV TNWPQ* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG0277 | GlcD | 1.0e-16 | 99 | 242 | 164 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| pfam01565 | FAD_binding_4 | 1.0e-19 | 87 | 212 | 141 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL24314.1 | 0 | 1 | 433 | 1 | 448 | berberine bridge enzyme-like protein [Arabidopsis thaliana] |
| RefSeq | NP_199251.1 | 0 | 1 | 433 | 1 | 447 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
| RefSeq | NP_199252.1 | 0 | 1 | 433 | 1 | 448 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
| RefSeq | NP_199253.1 | 0 | 1 | 433 | 1 | 444 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
| RefSeq | XP_002268361.1 | 0 | 10 | 433 | 3 | 436 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vte_A | 0 | 32 | 435 | 1 | 424 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
| PDB | 4dns_B | 0 | 26 | 433 | 1 | 404 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 4dns_A | 0 | 26 | 433 | 1 | 404 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_B | 0 | 33 | 433 | 6 | 404 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_A | 0 | 33 | 433 | 6 | 404 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |
