| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra027699 |
| Family | CBM49 |
| Protein Properties | Length: 622 Molecular Weight: 68533.5 Isoelectric Point: 9.9747 |
| Chromosome | Chromosome/Scaffold: 09 Start: 6838031 End: 6841380 |
| Description | glycosyl hydrolase 9C2 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM49 | 529 | 606 | 2.3e-36 |
| VAIVQKMTGSWVSKGRTYYRYSTTVINKSPRALKSLNLSIKNLYGPIWGLSRSGNSFGLPSWMQSLQSGKSLEFVYIH | |||
| GH9 | 25 | 486 | 0 |
| DYGQALSKSLLFFEAQRSGVLPRNQRVTWRSHSGLTDGKSSGVNLVGGYYDAGDNVKFGLPMAFTVTMMAWSVIEYGNQLAANGELGHSIDAIKWGTDYF IKAHPEPNVLYGEVGDGNTDHYCWQRPEEMTTDRKAYRIDPSNPGSDLAGETAAAMAAASIVFRRSNPAYSRLLLTHAYQLFDFADKYRGKYDSSITVAR KYYGSVSGYNDELLWAAAWLYQASNNQFYLDYLGRNGDSMGGTGWSMTEFGWDVKYAGVQTLVAKFLMQGKAGRHTAVFQKFQQKADFFMCSLLGKGSRN IQKTPGGLIFRQRWNNMQFVTSASFLTTVYSDYLTSSRSNLRCSAGNVAPSQLLSFAKSQVDYILGDNPRATSYMVGYGNNFPQRVHHRGSSIVSYKVDR SFVTCRGGYATWFSRKGSDPNLLTGAIVGGPDAYDNFADRRDNYKQTEPATYNNAPLLGVLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 622 Download |
| MEIKFASVAA LLLLLSFPVA FSGHDYGQAL SKSLLFFEAQ RSGVLPRNQR VTWRSHSGLT 60 DGKSSGVNLV GGYYDAGDNV KFGLPMAFTV TMMAWSVIEY GNQLAANGEL GHSIDAIKWG 120 TDYFIKAHPE PNVLYGEVGD GNTDHYCWQR PEEMTTDRKA YRIDPSNPGS DLAGETAAAM 180 AAASIVFRRS NPAYSRLLLT HAYQLFDFAD KYRGKYDSSI TVARKYYGSV SGYNDELLWA 240 AAWLYQASNN QFYLDYLGRN GDSMGGTGWS MTEFGWDVKY AGVQTLVAKF LMQGKAGRHT 300 AVFQKFQQKA DFFMCSLLGK GSRNIQKTPG GLIFRQRWNN MQFVTSASFL TTVYSDYLTS 360 SRSNLRCSAG NVAPSQLLSF AKSQVDYILG DNPRATSYMV GYGNNFPQRV HHRGSSIVSY 420 KVDRSFVTCR GGYATWFSRK GSDPNLLTGA IVGGPDAYDN FADRRDNYKQ TEPATYNNAP 480 LLGVLARLSS GHSGYSQLLP VVPAPVVVRR PMPIRKPRVT SPVRASGPVA IVQKMTGSWV 540 SKGRTYYRYS TTVINKSPRA LKSLNLSIKN LYGPIWGLSR SGNSFGLPSW MQSLQSGKSL 600 EFVYIHSTSP ANVAVSSYTL A* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02171 | PLN02171 | 0 | 23 | 621 | 602 | + endoglucanase | ||
| PLN02340 | PLN02340 | 0 | 23 | 618 | 601 | + endoglucanase | ||
| PLN02420 | PLN02420 | 0 | 23 | 488 | 468 | + endoglucanase | ||
| PLN00119 | PLN00119 | 0 | 25 | 489 | 465 | + endoglucanase | ||
| pfam00759 | Glyco_hydro_9 | 0 | 25 | 486 | 464 | + Glycosyl hydrolase family 9. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005576 | extracellular region |
| GO:0005975 | carbohydrate metabolic process |
| GO:0030246 | carbohydrate binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAN31840.1 | 0 | 4 | 621 | 3 | 620 | putative endo-beta-1,4-glucanase [Arabidopsis thaliana] |
| EMBL | CAB43938.1 | 0 | 3 | 621 | 5 | 620 | endo-beta-1,4-glucanase [Fragaria x ananassa] |
| EMBL | CAC94006.1 | 0 | 3 | 621 | 5 | 620 | endo-beta-1,4-glucanase [Fragaria x ananassa] |
| RefSeq | NP_176621.1 | 0 | 4 | 621 | 3 | 620 | AtGH9C2 (Arabidopsis thaliana glycosyl hydrolase 9C2); carbohydrate binding / catalytic/ hydrolase, hydrolyzing O-glycosyl compounds |
| RefSeq | XP_002299478.1 | 0 | 3 | 621 | 5 | 622 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ksd_A | 0 | 24 | 488 | 3 | 428 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| PDB | 1ksc_A | 0 | 24 | 488 | 3 | 428 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| PDB | 1ks8_A | 0 | 24 | 488 | 3 | 428 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
| PDB | 2xfg_A | 0 | 18 | 488 | 18 | 459 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
| PDB | 4tf4_B | 0 | 25 | 494 | 5 | 446 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
