CAZyme Information

Basic Information
SpeciesBrassica rapa
Cazyme IDBra027735
FamilyCBM49
Protein PropertiesLength: 621 Molecular Weight: 68389.3 Isoelectric Point: 9.9076
ChromosomeChromosome/Scaffold: 09 Start: 6575615 End: 6578777
Descriptionglycosyl hydrolase 9C2
View CDS
External Links
NCBI Taxonomy
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
CBM495286051.3e-35
  VAIVQKMSGSWVSKGRTYYRYSTTVINKSPRALKSLNLSIKNLYGPIWGLSRSGNSFGLPSWMHSLQSGKSLEFVYIH
GH9244850
  DYGQALSKSLLFFEAQRSGVLPRNQRVTWRSHSGLTDGKSSGVNLVGGYYDAGDNVKFGLPMAFTVTMMAWSVIEYGNQLAANGELGHSIDAIKWGTDYF
  IKAHPEPNVLYGEVGDGNTDHYCWQRPEEMTTDRKAYRIDPSNPGSDLAGETAAAMAAASIVFRRSNPAYSRLLLTHAYQLFDFADKYRGKYDSSITVAR
  KYYGSVSGYNDELLWAAAWLYQASNNQFYLDYLGRNGDSMGGTGWSMTEFGWDVKYAGVQTLVAKFLMQGKGGRHTAVFQKFQQKADFFMCSLLGKGSRN
  IQKTPGGLIFRQRWNNMQFVTSASFLTTVYSDYLTSSRSNLRCSAGNVAPSQLLSFAKSQVDYILGDNPRATSYMVGYGNNFPQRVHHRGSSIVSYKVDR
  SFVTCRGGYATWFSRKGSDPNLLTGAIVGGPDAYDNFADRRDNYEQTEPATYNNAPLLGVLA
Full Sequence
Protein Sequence     Length: 621     Download
MKNFASVAAL LLLLCFPVAF SGHDYGQALS KSLLFFEAQR SGVLPRNQRV TWRSHSGLTD    60
GKSSGVNLVG GYYDAGDNVK FGLPMAFTVT MMAWSVIEYG NQLAANGELG HSIDAIKWGT    120
DYFIKAHPEP NVLYGEVGDG NTDHYCWQRP EEMTTDRKAY RIDPSNPGSD LAGETAAAMA    180
AASIVFRRSN PAYSRLLLTH AYQLFDFADK YRGKYDSSIT VARKYYGSVS GYNDELLWAA    240
AWLYQASNNQ FYLDYLGRNG DSMGGTGWSM TEFGWDVKYA GVQTLVAKFL MQGKGGRHTA    300
VFQKFQQKAD FFMCSLLGKG SRNIQKTPGG LIFRQRWNNM QFVTSASFLT TVYSDYLTSS    360
RSNLRCSAGN VAPSQLLSFA KSQVDYILGD NPRATSYMVG YGNNFPQRVH HRGSSIVSYK    420
VDRSFVTCRG GYATWFSRKG SDPNLLTGAI VGGPDAYDNF ADRRDNYEQT EPATYNNAPL    480
LGVLARLSSG HSGYSQLLPA VPAPVVVRRP MPIRKPRVTS PVRASGPVAI VQKMSGSWVS    540
KGRTYYRYST TVINKSPRAL KSLNLSIKNL YGPIWGLSRS GNSFGLPSWM HSLQSGKSLE    600
FVYIHSTTPA NVAVSSYTLA * 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
PLN02171PLN0217101620629+
PLN02340PLN0234003617622+
PLN02420PLN0242002487500+
PLN00119PLN0011906488483+
pfam00759Glyco_hydro_9024485464+
Gene Ontology
GO TermDescription
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005576extracellular region
GO:0005975carbohydrate metabolic process
GO:0030246carbohydrate binding
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankAAN31840.1016201620putative endo-beta-1,4-glucanase [Arabidopsis thaliana]
EMBLCAB43938.102262025620endo-beta-1,4-glucanase [Fragaria x ananassa]
EMBLCAC94006.102262025620endo-beta-1,4-glucanase [Fragaria x ananassa]
RefSeqNP_176621.1016201620AtGH9C2 (Arabidopsis thaliana glycosyl hydrolase 9C2); carbohydrate binding / catalytic/ hydrolase, hydrolyzing O-glycosyl compounds
RefSeqXP_002299478.1066209622predicted protein [Populus trichocarpa]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB1ksd_A0234873428A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis
PDB1ksc_A0234873428A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis
PDB1ks8_A0234873428A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5.
PDB2xfg_A01748718459B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules
PDB4tf4_B0244935446B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules
Transmembrane Domains
StartEnd
726
Signal Peptide
Cleavage Site
21
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
HO783495378274040
ES9070372842154980
ES821522357273810
EX0218692651434070
EG5223222751264000
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_002_01464.1.518.596Aquca_037_00141.1.542.619Aquca_013_00114.1.534.611
Arabidopsis lyrata474038.535.614489943.534.611892975.528.605
Arabidopsis thalianaAT1G64390.1.528.605AT1G48930.1.535.614AT4G11050.1.534.611
Brachypodium distachyonBradi2g32270.1.538.616Bradi2g07150.1.534.613
Brassica rapaBra032270.517.596Bra000732.268.345Bra027699.529.606Bra018765.532.611Bra027735.528.605
Carica papayaevm.model.supercontig_183.4.367.446evm.TU.contig_27379.2.529.606
Capsella rubellaCarubv10012624m.534.613Carubv10003874m.535.612Carubv10019981m.528.605
Citrus clementinaCiclev10019301m.537.614Ciclev10033912m.569.648
Citrus sinensisorange1.1g043219m.499.578orange1.1g019436m.249.326orange1.1g017562m.277.354orange1.1g011712m.387.464orange1.1g006835m.537.614
Cucumis sativusCucsa.107370.1.527.604Cucsa.128330.1.503.582Cucsa.303850.1.533.608
Eucalyptus grandisEucgr.D01733.1.529.606Eucgr.J00862.1.484.562Eucgr.E00858.1.526.602Eucgr.D01896.1
Fragaria vescamrna32087.1-v1.0-hybrid.632.709mrna11058.1-v1.0-hybrid.533.612
Glycine maxGlyma12g03050.1.537.616Glyma05g36930.1.532.609Glyma08g02610.1.533.610Glyma11g10760.1.535.614
Gossypium raimondiiGorai.003G080800.1.533.609Gorai.008G254000.1.534.611Gorai.004G133700.1.536.613Gorai.005G210200.1.530.608
Linum usitatissimumLus10003888.529.606Lus10010201.535.613Lus10032377.534.611Lus10017402.508.586Lus10001833.527.603
Lus10033956
Malus domesticaMDP0000276676.536.613MDP0000131267.528.605MDP0000548943MDP0000722052.313.390MDP0000826600.538.616
Manihot esculentacassava4.1_004404m.486.565cassava4.1_003698m.530.607
Medicago truncatulaMedtr4g074960.1.571.649
Mimulus guttatusmgv1a003302m.501.580
Oryza sativaLOC_Os01g12070.1.544.625LOC_Os01g12030.1.543.620LOC_Os04g57860.1.531.610LOC_Os05g12150.1.535.613
Panicum virgatumPavirv00000152m.548.625Pavirv00066185m.348.426Pavirv00000772m.535.612Pavirv00030375m.537.614Pavirv00029375m.528.607
Physcomitrella patensPp1s176_127V6.1.544.623
Phaseolus vulgarisPhvul.011G030300.1.567.645Phvul.002G297600.1.530.607
Picea abiesMA_895058g0010MA_10437098g0010.516.596MA_127108g0010.524.603MA_42717g0010.527.604MA_10241783g0010.543.621
MA_19509g0020.547.626
Populus trichocarpaPotri.003G139600.1.530.607Potri.001G092200.1.530.607Potri.001G092200.5.285.362Potri.007G071200.1.520.599Potri.007G071200.2.519.598
Potri.001G092200.4.375.452
Prunus persicappa002939m.528.605ppa022524m.499.578
Ricinus communis29675.m000388.528.607
Setaria italicaSi000642m.549.626Si021474m.530.607Si021476m.528.606
Selaginella moellendorffii234652.525.60399802.550.630
Sorghum bicolorSb09g006670.1.535.612Sb03g001560.1.561.639Sb06g032760.1.534.615
Thellungiella halophilaThhalv10023353m.527.604Thhalv10011318m.534.613Thhalv10028514m.535.612
Vitis viniferaGSVIVT01019523001.537.614GSVIVT01012043001.524.602
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny  (This image is cropped. Click for full image.)