| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra027735 |
| Family | CBM49 |
| Protein Properties | Length: 621 Molecular Weight: 68389.3 Isoelectric Point: 9.9076 |
| Chromosome | Chromosome/Scaffold: 09 Start: 6575615 End: 6578777 |
| Description | glycosyl hydrolase 9C2 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM49 | 528 | 605 | 1.3e-35 |
| VAIVQKMSGSWVSKGRTYYRYSTTVINKSPRALKSLNLSIKNLYGPIWGLSRSGNSFGLPSWMHSLQSGKSLEFVYIH | |||
| GH9 | 24 | 485 | 0 |
| DYGQALSKSLLFFEAQRSGVLPRNQRVTWRSHSGLTDGKSSGVNLVGGYYDAGDNVKFGLPMAFTVTMMAWSVIEYGNQLAANGELGHSIDAIKWGTDYF IKAHPEPNVLYGEVGDGNTDHYCWQRPEEMTTDRKAYRIDPSNPGSDLAGETAAAMAAASIVFRRSNPAYSRLLLTHAYQLFDFADKYRGKYDSSITVAR KYYGSVSGYNDELLWAAAWLYQASNNQFYLDYLGRNGDSMGGTGWSMTEFGWDVKYAGVQTLVAKFLMQGKGGRHTAVFQKFQQKADFFMCSLLGKGSRN IQKTPGGLIFRQRWNNMQFVTSASFLTTVYSDYLTSSRSNLRCSAGNVAPSQLLSFAKSQVDYILGDNPRATSYMVGYGNNFPQRVHHRGSSIVSYKVDR SFVTCRGGYATWFSRKGSDPNLLTGAIVGGPDAYDNFADRRDNYEQTEPATYNNAPLLGVLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 621 Download |
| MKNFASVAAL LLLLCFPVAF SGHDYGQALS KSLLFFEAQR SGVLPRNQRV TWRSHSGLTD 60 GKSSGVNLVG GYYDAGDNVK FGLPMAFTVT MMAWSVIEYG NQLAANGELG HSIDAIKWGT 120 DYFIKAHPEP NVLYGEVGDG NTDHYCWQRP EEMTTDRKAY RIDPSNPGSD LAGETAAAMA 180 AASIVFRRSN PAYSRLLLTH AYQLFDFADK YRGKYDSSIT VARKYYGSVS GYNDELLWAA 240 AWLYQASNNQ FYLDYLGRNG DSMGGTGWSM TEFGWDVKYA GVQTLVAKFL MQGKGGRHTA 300 VFQKFQQKAD FFMCSLLGKG SRNIQKTPGG LIFRQRWNNM QFVTSASFLT TVYSDYLTSS 360 RSNLRCSAGN VAPSQLLSFA KSQVDYILGD NPRATSYMVG YGNNFPQRVH HRGSSIVSYK 420 VDRSFVTCRG GYATWFSRKG SDPNLLTGAI VGGPDAYDNF ADRRDNYEQT EPATYNNAPL 480 LGVLARLSSG HSGYSQLLPA VPAPVVVRRP MPIRKPRVTS PVRASGPVAI VQKMSGSWVS 540 KGRTYYRYST TVINKSPRAL KSLNLSIKNL YGPIWGLSRS GNSFGLPSWM HSLQSGKSLE 600 FVYIHSTTPA NVAVSSYTLA * 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02171 | PLN02171 | 0 | 1 | 620 | 629 | + endoglucanase | ||
| PLN02340 | PLN02340 | 0 | 3 | 617 | 622 | + endoglucanase | ||
| PLN02420 | PLN02420 | 0 | 2 | 487 | 500 | + endoglucanase | ||
| PLN00119 | PLN00119 | 0 | 6 | 488 | 483 | + endoglucanase | ||
| pfam00759 | Glyco_hydro_9 | 0 | 24 | 485 | 464 | + Glycosyl hydrolase family 9. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005576 | extracellular region |
| GO:0005975 | carbohydrate metabolic process |
| GO:0030246 | carbohydrate binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAN31840.1 | 0 | 1 | 620 | 1 | 620 | putative endo-beta-1,4-glucanase [Arabidopsis thaliana] |
| EMBL | CAB43938.1 | 0 | 22 | 620 | 25 | 620 | endo-beta-1,4-glucanase [Fragaria x ananassa] |
| EMBL | CAC94006.1 | 0 | 22 | 620 | 25 | 620 | endo-beta-1,4-glucanase [Fragaria x ananassa] |
| RefSeq | NP_176621.1 | 0 | 1 | 620 | 1 | 620 | AtGH9C2 (Arabidopsis thaliana glycosyl hydrolase 9C2); carbohydrate binding / catalytic/ hydrolase, hydrolyzing O-glycosyl compounds |
| RefSeq | XP_002299478.1 | 0 | 6 | 620 | 9 | 622 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ksd_A | 0 | 23 | 487 | 3 | 428 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
| PDB | 1ksc_A | 0 | 23 | 487 | 3 | 428 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
| PDB | 1ks8_A | 0 | 23 | 487 | 3 | 428 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
| PDB | 2xfg_A | 0 | 17 | 487 | 18 | 459 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
| PDB | 4tf4_B | 0 | 24 | 493 | 5 | 446 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
