| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra027763 |
| Family | GH51 |
| Protein Properties | Length: 1300 Molecular Weight: 148979 Isoelectric Point: 9.8553 |
| Chromosome | Chromosome/Scaffold: 09 Start: 6382299 End: 6387368 |
| Description | alpha-L-arabinofuranosidase 2 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH51 | 6 | 293 | 0 |
| PHEALDGIEFARGDANSTWGSVRAAMGHPKPFGLKYVAVGNEDCGKKYYKGNYLEFYNAIKKAYPDIKIISNCDGSSQPLDHPADYYDYHVYTLAKELFS MSHMFDKTSRDGPKAFVSEYAVNITDANTGNLLAALGEAGFLLGLEKNSDVVGMVSYAPLFVNTNDRRWLPDAIVFNSSHLYGTPSYWVQQFFTESSGAT LLSSTMEGNSSYVEASAISFQSNGSDYIQIKAVNFANVTVELKVKMTGLESSNTKVSAKKKKVLTSASVMDENSFSNPEMIAPQETLV | |||
| Full Sequence |
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| Protein Sequence Length: 1300 Download |
| MIKLKPHEAL DGIEFARGDA NSTWGSVRAA MGHPKPFGLK YVAVGNEDCG KKYYKGNYLE 60 FYNAIKKAYP DIKIISNCDG SSQPLDHPAD YYDYHVYTLA KELFSMSHMF DKTSRDGPKA 120 FVSEYAVNIT DANTGNLLAA LGEAGFLLGL EKNSDVVGMV SYAPLFVNTN DRRWLPDAIV 180 FNSSHLYGTP SYWVQQFFTE SSGATLLSST MEGNSSYVEA SAISFQSNGS DYIQIKAVNF 240 ANVTVELKVK MTGLESSNTK VSAKKKKVLT SASVMDENSF SNPEMIAPQE TLVVMPETTE 300 FCIVYVLPNG NNQKPYDTYK GMRWQMHVST NRSHGDGAEL AALQLAADSF YLSCSLLERK 360 SKQRSGNKSV LAMATGVDRA KRITAIEGKI ESTADRIIEM MNEMMRMMAM GFEKLDLRKE 420 DQTGEKDRLE AGPITSGSYA MDQVMDRSQQ CVRKLTPLVV EQQLERNTET FREPAMVVQE 480 RMSRSSNLEW FEKQLIEIAG ESGISLEELE ETRGMTGYVR LNPPVTKLED KNENHVFLLD 540 EVIHVVTCEN VAEGEESPAT MIDLLEKVPS VEQRDKARKK KKRWKIPLVG IENNLGKGLE 600 LEGNGDKSVD CEEPWLSFVD SKRSDKHQCE RGEQMEAVMN SYACHMLDKM HLRGKKVKMN 660 IKKEFNQSKR CKYQAEKVNS EMAEFQRKNR SRSQRNSLMK CWKRVRCLLL STHQRCRLLK 720 FIKKKKGRMK VEYGKERIKD VRTLMNTQLA SGYPMVKKER TKWRECKFRH KQKKLRKIIE 780 ERFLIYLGCK VMHPHELVKL KGEWRPAAIM RRGSKLKCVA HGKLLSGRLV LMDTKEQDKT 840 EMEFGRKRIQ YNLSRQIDKR GNLSACLWNS ELEHALSRKK LRWCKRSHRK EACLCCVKLP 900 LLQNLVKQNE KLFSIKMETR DKSKQGCVGL VFLKMIYLER NSLNSLLLTR RGFTIQSSWR 960 MKGYKLVKWL GVLGNGNGDG RQRHAMEYVI LFSLSPTELK KLLMEWEKHK AGDKYKKKQT 1020 AMSKMSFSGN YVVNLVNLMR KEFLTSGKRA KSRQTVMSNG LGCLEMLSPP RMAGKKASSK 1080 SLCDFVFLLH ILENQIMESA SPPCVFEHND TEAVHRKSKL RCSGQNLCKL KQQEQHKFLL 1140 SGKRVKLQRE SRKEKFCGKW KKRVELCFEF LPSIDHKENA EKVCHEKMIK PSSLEMSSEY 1200 EMIEKQKLET WRKEVSWMEQ VMKICLDIWK AVRSSNLEEK VDFKGGGNDT YKGMRWQMHV 1260 STNRSHGDGA ELAALQLAAD SFYLSCSLLE RKVIESLSE* 1320 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3534 | AbfA | 1.0e-6 | 6 | 52 | 52 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
| pfam06964 | Alpha-L-AF_C | 1.0e-31 | 152 | 308 | 166 | + Alpha-L-arabinofuranosidase C-terminus. This family represents the C-terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (EC:3.2.1.55). This catalyzes the hydrolysis of nonreducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| smart00813 | Alpha-L-AF_C | 4.0e-36 | 152 | 308 | 166 | + Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0046373 | L-arabinose metabolic process |
| GO:0046556 | alpha-N-arabinofuranosidase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD40132.1 | 0 | 7 | 308 | 189 | 490 | AF149413_13 contains similarity to arabinosidase [Arabidopsis thaliana] |
| GenBank | AAK50089.1 | 0 | 7 | 334 | 348 | 672 | AF372949_1 AT3g10740/T7M13_18 [Arabidopsis thaliana] |
| DDBJ | BAD95302.1 | 0 | 8 | 308 | 63 | 360 | putative alpha-L-arabinofuranosidase [Arabidopsis thaliana] |
| RefSeq | NP_187685.1 | 0 | 7 | 334 | 348 | 672 | ASD1 (ALPHA-L-ARABINOFURANOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, acting on glycosyl bonds / xylan 1,4-beta-xylosidase [Arabidopsis thaliana] |
| RefSeq | NP_197984.2 | 0 | 7 | 308 | 347 | 643 | ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2); alpha-N-arabinofuranosidase/ hydrolase, acting on glycosyl bonds [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3s2c_L | 0.000002 | 8 | 301 | 133 | 467 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_K | 0.000002 | 8 | 301 | 133 | 467 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_J | 0.000002 | 8 | 301 | 133 | 467 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_I | 0.000002 | 8 | 301 | 133 | 467 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_H | 0.000002 | 8 | 301 | 133 | 467 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CO749342 | 430 | 871 | 1300 | 0 |
| FG558615 | 228 | 7 | 234 | 0 |
| EV052114 | 228 | 53 | 280 | 0 |
| FY438994 | 281 | 13 | 292 | 0 |
| CO749342 | 44 | 317 | 360 | 0.00000000002 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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