| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra027802 |
| Family | GT47 |
| Protein Properties | Length: 611 Molecular Weight: 69458.8 Isoelectric Point: 6.8224 |
| Chromosome | Chromosome/Scaffold: 09 Start: 6055227 End: 6057059 |
| Description | root hair specific 8 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT47 | 222 | 545 | 0 |
| SCEGKGIYVYDLPSKFNKDLLGECSDMVPWANFCSYFKNDALGESIESLGKGWFRTHQYSLEPIFHSRVLKHPCRVYDENLAKLFYVPFYGGIDVLRWHF KNVSEDIKDVLAIEVVKWLGSKQSWRKNAGKDHVFVLGKISWDFRRKNKLSWGSSLLEMEEMKNPTKLLIERNPWEVNDIAIPHPTFFHPKTDDDISTWQ NKIIVKHRRSLISFAGGARPGNPDSIRSTLIDQCTSSPDQCRFLNCTSGGCDKPESVIELFQDSEFCLQPPGDSPTRKSVFDSLVAGCIPVIFDPYTAYY QYTWHLPEDHRTYSVYINKEELKA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 611 Download |
| MPVSISKRRP KTSKKTETEK PEASLKDPRT GCNSICSVFS SSILYRVPLT ILFLFFIYLW 60 STSTTVISGN VVHICISSRK LNDLYCLTAG TQPGLHVPVS NFTNPVSENV IKSEEEKSVV 120 VLGEGGERDS ASFTVGASPN VIKNETSTGE RGSGLDQDSK PFNEKNLDSF LVDWDSETGE 180 ERYRYINSKD EDEETALKAV DKYLKIQRSW LSTGNNRNEQ GSCEGKGIYV YDLPSKFNKD 240 LLGECSDMVP WANFCSYFKN DALGESIESL GKGWFRTHQY SLEPIFHSRV LKHPCRVYDE 300 NLAKLFYVPF YGGIDVLRWH FKNVSEDIKD VLAIEVVKWL GSKQSWRKNA GKDHVFVLGK 360 ISWDFRRKNK LSWGSSLLEM EEMKNPTKLL IERNPWEVND IAIPHPTFFH PKTDDDISTW 420 QNKIIVKHRR SLISFAGGAR PGNPDSIRST LIDQCTSSPD QCRFLNCTSG GCDKPESVIE 480 LFQDSEFCLQ PPGDSPTRKS VFDSLVAGCI PVIFDPYTAY YQYTWHLPED HRTYSVYINK 540 EELKANKVNV IEKLMAMSLR EREDMRSYIV HELLPGLVYG DPNGKFERFR DGFDITIDSL 600 LRMISKKIVS * 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam03016 | Exostosin | 7.0e-68 | 222 | 557 | 352 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016020 | membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_176534.2 | 0 | 1 | 608 | 24 | 664 | catalytic [Arabidopsis thaliana] |
| RefSeq | NP_198941.1 | 0 | 5 | 609 | 2 | 561 | exostosin family protein [Arabidopsis thaliana] |
| RefSeq | XP_002269913.1 | 0 | 175 | 606 | 116 | 536 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002299537.1 | 0 | 1 | 606 | 1 | 571 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509789.1 | 0 | 70 | 606 | 58 | 565 | Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis] |
