| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra027867 |
| Family | CBM22 |
| Protein Properties | Length: 922 Molecular Weight: 102601 Isoelectric Point: 6.1707 |
| Chromosome | Chromosome/Scaffold: 09 Start: 9377362 End: 9380882 |
| Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM22 | 30 | 169 | 4.9e-32 |
| NVIVNHDFSLGTHSWHPNCCEASIVTADSGIPHGVLDPSKYGSYVVVNNRKETWQGLEQDITSRVKPCSLYKVTATVAVSGPVQGLEEVMATLKLENQQS PTNYQFIAKTCVFKEKWVRLEGMFSLPSLPERVVFYLEGP | |||
| CBM22 | 202 | 338 | 2.8e-32 |
| NLVVNPNFEDGLNNWSGRSCKIVCHDSMADGKIVPQSGKAFAAATERTQSWNGIQQEITGKVERKRVYEATAVVRIYGNNVTSATVQATLWVQNPNQRDQ YIGIANVQATDKEWIQCKGKFLLNGSASRVVIYIEGP | |||
| CBM22 | 373 | 515 | 3.09967e-42 |
| NILTNSQLTDGTTNGWFPLGNCTLSVAEGSPRILPPMARDSLGPHEPLSGRYMLVTNRTQTWMGPAQMITDKLKLFLTYQISVWVKLGSGINSPQNVNVA LGIDSQWVNGGQVEINDDKWHEIGGSFRVEKQPSKTLVYIQGP | |||
| GH10 | 572 | 849 | 0 |
| RQTRNSFPVGTCISRSSIDNEDFVEFFLKNFNWAVFGNELKWYWTEPEQGKLNYQDADDMLNLCSSNNIETRGHCIFWEVQATVQQWIQNMNQNDLNTAV QNRLTGLLNRYKGKFKHYDVNNEMLHGSFYQDKLGKDIRVNMFKTAHQLDPSARLFVNDYHIEDGCDPKSCPEKYIEHILDLQEKGAPVGGIGIQGHIDS PVGPIVCSALDRLGILGLPIWFTELDVSSINEHIRGDDLEVMMWEAFGHPAVEGIMLWGFWELFMSRDNSHLVNAEGD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 922 Download |
| MEISRNDNGE HAKQNNNNNV TPVIGSDRTN VIVNHDFSLG THSWHPNCCE ASIVTADSGI 60 PHGVLDPSKY GSYVVVNNRK ETWQGLEQDI TSRVKPCSLY KVTATVAVSG PVQGLEEVMA 120 TLKLENQQSP TNYQFIAKTC VFKEKWVRLE GMFSLPSLPE RVVFYLEGPS PGIDLLIQSV 180 TIHLESDPEL ERREAVTVED ENLVVNPNFE DGLNNWSGRS CKIVCHDSMA DGKIVPQSGK 240 AFAAATERTQ SWNGIQQEIT GKVERKRVYE ATAVVRIYGN NVTSATVQAT LWVQNPNQRD 300 QYIGIANVQA TDKEWIQCKG KFLLNGSASR VVIYIEGPPP GTDILLNSLT VKHAEKIPPS 360 PRPAIENPAF GVNILTNSQL TDGTTNGWFP LGNCTLSVAE GSPRILPPMA RDSLGPHEPL 420 SGRYMLVTNR TQTWMGPAQM ITDKLKLFLT YQISVWVKLG SGINSPQNVN VALGIDSQWV 480 NGGQVEINDD KWHEIGGSFR VEKQPSKTLV YIQGPSSGVD LMVAGLQIFP VDRLARIKHL 540 RRQSDKIRRS DVILKFSGAD ASKLSGATVK VRQTRNSFPV GTCISRSSID NEDFVEFFLK 600 NFNWAVFGNE LKWYWTEPEQ GKLNYQDADD MLNLCSSNNI ETRGHCIFWE VQATVQQWIQ 660 NMNQNDLNTA VQNRLTGLLN RYKGKFKHYD VNNEMLHGSF YQDKLGKDIR VNMFKTAHQL 720 DPSARLFVND YHIEDGCDPK SCPEKYIEHI LDLQEKGAPV GGIGIQGHID SPVGPIVCSA 780 LDRLGILGLP IWFTELDVSS INEHIRGDDL EVMMWEAFGH PAVEGIMLWG FWELFMSRDN 840 SHLVNAEGDV NEAGKRLLAV KKDWLSHANG HIDQNGAFAF RGYHGNYAVE VITSSSQKVL 900 KTFVVEKGDS AQVITVDLQG L* 960 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 2.0e-15 | 202 | 342 | 145 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| pfam02018 | CBM_4_9 | 2.0e-17 | 372 | 517 | 151 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 2.0e-32 | 556 | 799 | 258 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| smart00633 | Glyco_10 | 1.0e-81 | 611 | 857 | 268 | + Glycosyl hydrolase family 10. | ||
| pfam00331 | Glyco_hydro_10 | 3.0e-83 | 576 | 861 | 306 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAG50641.1 | 0 | 1 | 921 | 1 | 915 | AC082643_5 xylan endohydrolase isoenzyme, putative [Arabidopsis thaliana] |
| GenBank | AAX33301.1 | 0 | 1 | 918 | 1 | 915 | putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] |
| RefSeq | NP_176133.1 | 0 | 1 | 921 | 1 | 917 | RXF12; endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | XP_002301133.1 | 0 | 26 | 918 | 160 | 1049 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301133.1 | 0 | 201 | 528 | 1 | 314 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1i1x_A | 5e-29 | 601 | 830 | 39 | 268 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| PDB | 1i1w_A | 5e-29 | 601 | 830 | 39 | 268 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1xyz_B | 7e-29 | 564 | 831 | 23 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1xyz_A | 7e-29 | 564 | 831 | 23 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 2bnj_A | 9e-29 | 601 | 799 | 39 | 241 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EB442796 | 298 | 401 | 698 | 0 |
| EX570690 | 295 | 624 | 918 | 0 |
| HO789518 | 291 | 617 | 907 | 0 |
| EB442796 | 128 | 224 | 351 | 0.0000003 |
| EB442796 | 112 | 71 | 182 | 0.000002 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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