| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra027892 |
| Family | CE8 |
| Protein Properties | Length: 201 Molecular Weight: 22326.4 Isoelectric Point: 5.9588 |
| Chromosome | Chromosome/Scaffold: 09 Start: 9648563 End: 9649696 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 2 | 198 | 0 |
| LVNAEYFVAINVTFKNSYNNITSSLVPYKEVKVAPSIVLMADKAWFYGCSFISVQDTLADFVDRHYFKNCYIEGAIDFIWRGGQSIYEKCVIYVKGMTKD EMVEGGAMLPGFITAQGRQSEQDTSGFVFKYCVIKGDGTAFLGRAYRGYSRVVFYATSMSNVIVPQGWDAWLNKGEEDKITFAEVNCTGEGANKQGR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 201 Download |
| MLVNAEYFVA INVTFKNSYN NITSSLVPYK EVKVAPSIVL MADKAWFYGC SFISVQDTLA 60 DFVDRHYFKN CYIEGAIDFI WRGGQSIYEK CVIYVKGMTK DEMVEGGAML PGFITAQGRQ 120 SEQDTSGFVF KYCVIKGDGT AFLGRAYRGY SRVVFYATSM SNVIVPQGWD AWLNKGEEDK 180 ITFAEVNCTG EGANKQGRAA * 240 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02176 | PLN02176 | 5.0e-49 | 5 | 198 | 195 | + putative pectinesterase | ||
| PLN02432 | PLN02432 | 1.0e-49 | 3 | 200 | 198 | + putative pectinesterase | ||
| PLN02665 | PLN02665 | 3.0e-54 | 3 | 199 | 202 | + pectinesterase family protein | ||
| PLN02682 | PLN02682 | 1.0e-54 | 3 | 200 | 199 | + pectinesterase family protein | ||
| PLN02497 | PLN02497 | 6.0e-65 | 5 | 199 | 199 | + probable pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI40838.1 | 0 | 5 | 200 | 125 | 312 | unnamed protein product [Vitis vinifera] |
| GenBank | EAY73651.1 | 0 | 8 | 198 | 133 | 303 | hypothetical protein OsI_01540 [Oryza sativa Indica Group] |
| RefSeq | XP_002263748.1 | 0 | 5 | 200 | 112 | 299 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002455508.1 | 0 | 8 | 198 | 130 | 306 | hypothetical protein SORBIDRAFT_03g012410 [Sorghum bicolor] |
| RefSeq | XP_002512520.1 | 0 | 1 | 198 | 109 | 299 | Pectinesterase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 7e-21 | 8 | 198 | 96 | 278 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0.0000000000001 | 22 | 198 | 99 | 274 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 0.00000003 | 1 | 200 | 117 | 335 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 0.000006 | 1 | 170 | 91 | 280 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 0.000006 | 1 | 170 | 91 | 280 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| AW036464 | 194 | 5 | 198 | 0 |
| GD076530 | 165 | 34 | 198 | 0 |
| BE434583 | 154 | 47 | 198 | 2.8026e-45 |
| HS561922 | 198 | 3 | 200 | 5.60519e-45 |
| DR495026 | 194 | 5 | 198 | 7.00649e-45 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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