y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra027926 |
Family | GH28 |
Protein Properties | Length: 436 Molecular Weight: 47649.1 Isoelectric Point: 7.3199 |
Chromosome | Chromosome/Scaffold: 09 Start: 9902431 End: 9904622 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 81 | 400 | 0 |
DSAVLLVPYTFCFLVKPTSFNGPCRTRLTLQIDGIIVSPDGPKSWPWNFKRQWLMFYRVNGLSIQGSGLVNGRGQKWWDLPCKPHKGVNGTTQPGPCDSP VAIRIFQSSDVKIKGLTFKNSAQFHVRFDNCDDVVVDSVTINAPASSPNTDGIHIENTHNVQIRNSVISNGDDCVSIGAGCFNVDIKNITCGPSHGISIG SLGVHNSSAWVSNITVTNSTIWNSDNGVRIKTWQGGSGLVSRIVFRNILMVNVRNPIMIDQYYCQTKNCANQTSAVIISDVLYANIKGSYDLRSPPMHFG CSDSFPSTNLRLEDVDLFPY |
Full Sequence |
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Protein Sequence Length: 436 Download |
MSFASKLLYA FFLILLSSAR VTHNMNLSPS PAPNPAYYDD NNNASTVFDV TSFGAIGDCR 60 TDDTSAFKMA WDTACMTIGV DSAVLLVPYT FCFLVKPTSF NGPCRTRLTL QIDGIIVSPD 120 GPKSWPWNFK RQWLMFYRVN GLSIQGSGLV NGRGQKWWDL PCKPHKGVNG TTQPGPCDSP 180 VAIRIFQSSD VKIKGLTFKN SAQFHVRFDN CDDVVVDSVT INAPASSPNT DGIHIENTHN 240 VQIRNSVISN GDDCVSIGAG CFNVDIKNIT CGPSHGISIG SLGVHNSSAW VSNITVTNST 300 IWNSDNGVRI KTWQGGSGLV SRIVFRNILM VNVRNPIMID QYYCQTKNCA NQTSAVIISD 360 VLYANIKGSY DLRSPPMHFG CSDSFPSTNL RLEDVDLFPY KGQLFENPFC WNAYGSMQTV 420 TVPPVNCLLE ALPGC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 3.0e-77 | 48 | 397 | 352 | + polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-79 | 45 | 428 | 391 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 1.0e-89 | 83 | 397 | 315 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 8.0e-98 | 44 | 397 | 357 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 4.0e-130 | 47 | 424 | 380 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_176064.1 | 0 | 1 | 433 | 1 | 432 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002276945.1 | 0 | 25 | 431 | 44 | 451 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002318932.1 | 0 | 28 | 433 | 60 | 461 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330008.1 | 0 | 45 | 433 | 19 | 406 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002512560.1 | 0 | 47 | 433 | 74 | 459 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 5e-22 | 108 | 383 | 36 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 5e-22 | 108 | 383 | 36 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 5e-22 | 108 | 383 | 36 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 5e-22 | 108 | 383 | 36 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 5e-22 | 108 | 383 | 36 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |