| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra028008 |
| Family | GH116 |
| Protein Properties | Length: 951 Molecular Weight: 106008 Isoelectric Point: 6.4505 |
| Chromosome | Chromosome/Scaffold: 09 Start: 19455280 End: 19459941 |
| Description | Beta-glucosidase, GBA2 type family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH116 | 523 | 884 | 0 |
| GQFLYLEGIQYLMYNTYDVHFYSSFALLMLFPKLELSIQRDFAAAVLMHDSSKKQVMSSGEFVTRKVLGAVPHDIGLNDPWFEVNAYNLFNTDRWKDLNS KFVLQVYRDVVATGDINFAKSVWPSVYTAIAYLDQFDKDGDGMIENEGFPDQTYDAWSCTGVSAYCGGLWVAALQAGSALALLVGDNGAAVYFNAKYDKA RSVYEKLWNGSYFNYDNSRSGSSSSILADQLAGQWYARACGLKPIAKEEWIKKALETVYDFNVMKVREGTRGAVNGMLPDGRVDTSTMVSREVWAGTTYS VAACMIQEGLADKGFRTASGIYEAAWSDRGLGVSFQTPEAWTTNDEYRSLCYMRPLAIWGMQ | |||
| Full Sequence |
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| Protein Sequence Length: 951 Download |
| MQNGHTETED KNQMAIDDKL PPISWERKLN SQAKTPSEFK LTKRDHLHLF PLGYRLWRHT 60 KEEAAKGRAS IFDIFRKHHI TGDHGVPLGG IGAGSIGRSY KGEFQQFKLF PKICEEAPIL 120 TNQFSVFVSR PGGVKHSTVL CPTRPEVIKD NGGYLCRGEA PNVGIDSWDW NMTGEKSTYH 180 ALYPRSWTVY EGEPDPELRI VSRQVSPFIP HNYKETSLPV SVFDFTVTNT GAEQAIVTLL 240 FTWENSVGGT SGLTGQHLNS TIMAKDGVHA VALHHKTANG HPPVTYAIAA KETEDVRVSS 300 CPSFLVSGTS PNKITAGDMW DEIKKNASFD KLTSNACSPS KPGTSIGAAI AAKVKVPPGC 360 DRTVTFSLSW DCPEARFDEK TYHRRYTRFY GGLGNAAVAM AHDALLNFSE WEAQIEEWQA 420 PILADTSLPE WYRTTLFNEL YYFNSGGTIW TDGLPPKQSL DSIGRRKISL SISTIDNPDS 480 DQNNIALDIL GRIDAVCSQI HAPLSSNAAL GTTMVQHTEE NIGQFLYLEG IQYLMYNTYD 540 VHFYSSFALL MLFPKLELSI QRDFAAAVLM HDSSKKQVMS SGEFVTRKVL GAVPHDIGLN 600 DPWFEVNAYN LFNTDRWKDL NSKFVLQVYR DVVATGDINF AKSVWPSVYT AIAYLDQFDK 660 DGDGMIENEG FPDQTYDAWS CTGVSAYCGG LWVAALQAGS ALALLVGDNG AAVYFNAKYD 720 KARSVYEKLW NGSYFNYDNS RSGSSSSILA DQLAGQWYAR ACGLKPIAKE EWIKKALETV 780 YDFNVMKVRE GTRGAVNGML PDGRVDTSTM VSREVWAGTT YSVAACMIQE GLADKGFRTA 840 SGIYEAAWSD RGLGVSFQTP EAWTTNDEYR SLCYMRPLAI WGMQWAHTMP QPNREQEQSL 900 RPQEEEETSV LFQQHAGFIK VAHYLKTTKG KDHRSRLQSA YETFLRVVRL * 960 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG4354 | COG4354 | 4.0e-33 | 83 | 452 | 385 | + Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism] | ||
| pfam12215 | GBA2_N | 4.0e-68 | 85 | 411 | 336 | + beta-Glucocerebrosidase 2 N terminal. This domain is found in bacteria, archaea and eukaryotes. This domain is typically between 320 to 354 amino acids in length. This domain is found associated with pfam04685. This domain is found in the protein beta-Glucocerebrosidase 2. It is found just after the extreme N terminus. This protein is located in the ER. The N terminal is thought to be the luminal domain while the C terminal is the cytosolic domain. The catalytic domain of GBA-2 is unknown. | ||
| COG4354 | COG4354 | 3.0e-69 | 522 | 883 | 381 | + Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism] | ||
| pfam04685 | DUF608 | 4.0e-166 | 523 | 885 | 367 | + Protein of unknown function, DUF608. This family represents a conserved region with a pankaryotic distribution in a number of uncharacterized proteins. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004348 | glucosylceramidase activity |
| GO:0006665 | sphingolipid metabolic process |
| GO:0016021 | integral to membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF97289.1 | 0 | 127 | 950 | 24 | 790 | AC010164_11 Hypothetical protein [Arabidopsis thaliana] |
| GenBank | AAM19831.1 | 0 | 2 | 950 | 3 | 922 | AT4g10060/T5L19_190 [Arabidopsis thaliana] |
| GenBank | AAO42222.1 | 0 | 9 | 950 | 6 | 947 | unknown protein [Arabidopsis thaliana] |
| RefSeq | NP_174631.2 | 0 | 9 | 950 | 6 | 947 | catalytic/ glucosylceramidase [Arabidopsis thaliana] |
| RefSeq | NP_192744.6 | 0 | 2 | 950 | 3 | 922 | catalytic/ glucosylceramidase [Arabidopsis thaliana] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DY292040 | 365 | 536 | 897 | 0 |
| JG703027 | 328 | 541 | 868 | 0 |
| FC917648 | 306 | 536 | 841 | 0 |
| FC895322 | 298 | 400 | 693 | 0 |
| DY268096 | 309 | 435 | 739 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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