| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra028255 |
| Family | AA1 |
| Protein Properties | Length: 387 Molecular Weight: 43554.2 Isoelectric Point: 8.6696 |
| Chromosome | Chromosome/Scaffold: 01 Start: 19256297 End: 19257765 |
| Description | SKU5 similar 2 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA1 | 1 | 323 | 0 |
| MIGDWYTHNHTALRSVLDSSEELGMPDGVLINGKGPYKYNTNVPDGIQYKTINVDPGKTYRIRVHNVGVSTSLNFRIQNHKLLLVETECRYTSQTNFTDF DIHVVQSYSFLVTMDQNASSDYCIVASARFVNETEWQRVTGVGILHYSNSKGHASGLLPLPSTDVSHPWFVVNQQRGIKGARPNPHGSHHYGQINITGTY ILRSMPPTKINGSLRSTLNGVSFLNPSTPMTLADKHRLKGVYKLDFPSRPVDSKPPRLESSIINATYKGFIQVIFQNNDTKVQTFHIDGYSFYVVTMDFG NWTEDKKGSYNNWDAISRSTIEV | |||
| Full Sequence |
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| Protein Sequence Length: 387 Download |
| MIGDWYTHNH TALRSVLDSS EELGMPDGVL INGKGPYKYN TNVPDGIQYK TINVDPGKTY 60 RIRVHNVGVS TSLNFRIQNH KLLLVETECR YTSQTNFTDF DIHVVQSYSF LVTMDQNASS 120 DYCIVASARF VNETEWQRVT GVGILHYSNS KGHASGLLPL PSTDVSHPWF VVNQQRGIKG 180 ARPNPHGSHH YGQINITGTY ILRSMPPTKI NGSLRSTLNG VSFLNPSTPM TLADKHRLKG 240 VYKLDFPSRP VDSKPPRLES SIINATYKGF IQVIFQNNDT KVQTFHIDGY SFYVVTMDFG 300 NWTEDKKGSY NNWDAISRST IEVDSHLQFV SLLYTSFSCL VVSFLMFSFR FNQGHGLLYL 360 FPGITSEFEI SEPRTLTDGI LAKKHT* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02991 | PLN02991 | 3.0e-84 | 1 | 323 | 330 | + oxidoreductase | ||
| PLN02792 | PLN02792 | 2.0e-84 | 1 | 323 | 332 | + oxidoreductase | ||
| PLN02168 | PLN02168 | 4.0e-88 | 1 | 323 | 334 | + copper ion binding / pectinesterase | ||
| PLN02354 | PLN02354 | 5.0e-91 | 1 | 323 | 332 | + copper ion binding / oxidoreductase | ||
| PLN00044 | PLN00044 | 2.0e-147 | 2 | 323 | 329 | + multi-copper oxidase-related protein; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005507 | copper ion binding |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA23065.1 | 0 | 1 | 323 | 165 | 492 | Pollen-specific protein precursor like [Arabidopsis thaliana] |
| RefSeq | NP_194254.2 | 0 | 1 | 323 | 165 | 492 | SKS1 (SKU5 SIMILAR 1); copper ion binding / oxidoreductase [Arabidopsis thaliana] |
| RefSeq | NP_199961.1 | 0 | 1 | 323 | 164 | 492 | SKS2 (SKU5 SIMILAR 2); copper ion binding / oxidoreductase [Arabidopsis thaliana] |
| RefSeq | XP_002321832.1 | 0 | 1 | 323 | 167 | 495 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002510943.1 | 0 | 1 | 323 | 164 | 492 | multicopper oxidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1asq_B | 3e-20 | 1 | 323 | 140 | 485 | A Chain A, Crystal Structure Of A Possible 3-Hydroxyisobutyrate Dehydrogenase From Pseudomonas Aeruginosa Pao1 |
| PDB | 1asq_A | 3e-20 | 1 | 323 | 140 | 485 | A Chain A, Crystal Structure Of A Possible 3-Hydroxyisobutyrate Dehydrogenase From Pseudomonas Aeruginosa Pao1 |
| PDB | 1asp_B | 3e-20 | 1 | 323 | 140 | 485 | A Chain A, Crystal Structure Of A Possible 3-Hydroxyisobutyrate Dehydrogenase From Pseudomonas Aeruginosa Pao1 |
| PDB | 1asp_A | 3e-20 | 1 | 323 | 140 | 485 | A Chain A, Crystal Structure Of A Possible 3-Hydroxyisobutyrate Dehydrogenase From Pseudomonas Aeruginosa Pao1 |
| PDB | 1aso_B | 3e-20 | 1 | 323 | 140 | 485 | A Chain A, Crystal Structure Of A Possible 3-Hydroxyisobutyrate Dehydrogenase From Pseudomonas Aeruginosa Pao1 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GO877451 | 326 | 2 | 320 | 0 |
| HO796073 | 330 | 1 | 323 | 0 |
| DY810089 | 305 | 13 | 310 | 0 |
| DY810052 | 302 | 13 | 307 | 0 |
| HO796073 | 41 | 345 | 385 | 1.6 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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