| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra028256 |
| Family | CE8 |
| Protein Properties | Length: 546 Molecular Weight: 60390.2 Isoelectric Point: 9.8109 |
| Chromosome | Chromosome/Scaffold: 01 Start: 19253707 End: 19255650 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 230 | 529 | 0 |
| NIVVAKDGSGQVTTVQAAIDVAGRRKLMSKRFVIYVKRGIYQENINVRLNNDNIMLVGDGMRSTIITGGRSVKGGYTTYNSATAGIEGLHFIAKGLTFRN TAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHSQRQFYRECYIYGTIDFIFGNAAVVFQNCIILPRRPLHGQSNVITAQGRADPFQNTGISIHNSR ILPAPDLKPVLRTVKTYMGRPWMKYSRTVVLQTYLDSVVSPFGWSPWIEGSIFGLDTLFYAEYKNSGPASSTRWRVRWNGFHVLKRASDASAFTVGRFIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 546 Download |
| MHVMMHRIYF LSLYLISLLF LCLHPFTISA DDNSTTGIDK WCNQTPYPDP CKCYFKNHNG 60 FRLPTQLSEF RLMLVEATMD RAISARDELA RSSGNCTDCR KQAVFADCIN LYEDTIVQLT 120 RTLAGVAPKA GAGKKCTDFD AQTWLSTALT NIETCRRGSS DLNVSDFITP IVSNTKISNL 180 ISNCLAVNGA LLPTGNNSTT TADGKDFPTW VSGKERRLLQ LQSARAVRAN IVVAKDGSGQ 240 VTTVQAAIDV AGRRKLMSKR FVIYVKRGIY QENINVRLNN DNIMLVGDGM RSTIITGGRS 300 VKGGYTTYNS ATAGIEGLHF IAKGLTFRNT AGPAKGQAVA LRSSSDLSIF YKCSIEGYQD 360 TLMVHSQRQF YRECYIYGTI DFIFGNAAVV FQNCIILPRR PLHGQSNVIT AQGRADPFQN 420 TGISIHNSRI LPAPDLKPVL RTVKTYMGRP WMKYSRTVVL QTYLDSVVSP FGWSPWIEGS 480 IFGLDTLFYA EYKNSGPASS TRWRVRWNGF HVLKRASDAS AFTVGRFIAG PAWLPRTGIP 540 FTPGL* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02484 | PLN02484 | 2.0e-147 | 35 | 545 | 528 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02713 | PLN02713 | 2.0e-154 | 42 | 545 | 549 | + Probable pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 2.0e-155 | 98 | 545 | 451 | + pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 3.0e-172 | 230 | 530 | 301 | + Pectinesterase. | ||
| PLN02995 | PLN02995 | 0 | 1 | 545 | 545 | + Probable pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_190324.1 | 0 | 41 | 545 | 87 | 594 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_199962.1 | 0 | 1 | 545 | 1 | 536 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_199963.1 | 0 | 1 | 545 | 1 | 540 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002264861.1 | 0 | 15 | 545 | 7 | 523 | PREDICTED: hypothetical protein, partial [Vitis vinifera] |
| RefSeq | XP_002510939.1 | 0 | 34 | 545 | 27 | 526 | Pectinesterase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 227 | 545 | 5 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 229 | 545 | 3 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 1e-20 | 226 | 473 | 1 | 279 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 1e-20 | 226 | 473 | 1 | 279 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 1e-20 | 226 | 473 | 1 | 279 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
