| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra028286 |
| Family | AA3 |
| Protein Properties | Length: 583 Molecular Weight: 63918 Isoelectric Point: 7.7292 |
| Chromosome | Chromosome/Scaffold: 01 Start: 18927318 End: 18930759 |
| Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA3 | 38 | 579 | 0 |
| TFAPMFARFDYIVIGGGTSGCALAATLSQNATVLVLERGGSPHDTPTATDIGNFATTLSNTSPKSWSQLFVSEDGVYNTRARVLGGGSVLNAGFYTRAGD DYVKEADWMSDEVEAAYEWVEKKVAFKPPMLGWQTALKDGLLEVGEFPYNGFTYDHINGTKIGGTIFDDAGQRHTAANLLEYSNPNSIAVYLHATVHKIL FTTKGRPRPKSYGVIFQDANGVLHKAELAKNTMNEVILSAGAIGSPQLLMLSGVGPMAHLVAHGIKPVVLDHPMVGQGMADNPMNAIFIPSPTSVEVSLI QVVGITKFDSYIEGASGVIFSYSWTRNFFDGVLNYLNEISRTTTSTSLSTQSITDFFKSINPLLNATIKAGLILQKVAGPVSRGHLELRNINPNDNPSVR FNYYQEAEDLEKCVEGISTIIKVINSKAFSKFKYPEATIHGLLDLIRSVPTNLRPRHATSVLNLKQFCIDTVMSIWHYHGGCQVGRVVDKNYKVLGIHGL RVIDGSTFLKSPGTNPQATIMMLGRYMGQKILRERDAFHNRN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 583 Download |
| MSFQILWLCR IILIVTFISH GSSFPDQVGY YSFMKDATFA PMFARFDYIV IGGGTSGCAL 60 AATLSQNATV LVLERGGSPH DTPTATDIGN FATTLSNTSP KSWSQLFVSE DGVYNTRARV 120 LGGGSVLNAG FYTRAGDDYV KEADWMSDEV EAAYEWVEKK VAFKPPMLGW QTALKDGLLE 180 VGEFPYNGFT YDHINGTKIG GTIFDDAGQR HTAANLLEYS NPNSIAVYLH ATVHKILFTT 240 KGRPRPKSYG VIFQDANGVL HKAELAKNTM NEVILSAGAI GSPQLLMLSG VGPMAHLVAH 300 GIKPVVLDHP MVGQGMADNP MNAIFIPSPT SVEVSLIQVV GITKFDSYIE GASGVIFSYS 360 WTRNFFDGVL NYLNEISRTT TSTSLSTQSI TDFFKSINPL LNATIKAGLI LQKVAGPVSR 420 GHLELRNINP NDNPSVRFNY YQEAEDLEKC VEGISTIIKV INSKAFSKFK YPEATIHGLL 480 DLIRSVPTNL RPRHATSVLN LKQFCIDTVM SIWHYHGGCQ VGRVVDKNYK VLGIHGLRVI 540 DGSTFLKSPG TNPQATIMML GRYMGQKILR ERDAFHNRNE ET* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR03970 | Rv0697 | 5.0e-9 | 417 | 561 | 152 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
| TIGR03970 | Rv0697 | 1.0e-20 | 47 | 320 | 316 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
| pfam05199 | GMC_oxred_C | 2.0e-24 | 417 | 561 | 150 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
| COG2303 | BetA | 4.0e-46 | 40 | 574 | 588 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
| PLN02785 | PLN02785 | 0 | 16 | 572 | 560 | + Protein HOTHEAD | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB11043.1 | 0 | 1 | 562 | 1 | 563 | mandelonitrile lyase-like protein [Arabidopsis thaliana] |
| EMBL | CAB87405.1 | 0 | 1 | 562 | 1 | 557 | ADHESION OF CALYX EDGES-like protein [Arabidopsis thaliana] |
| RefSeq | NP_001119417.1 | 0 | 34 | 581 | 1 | 552 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
| RefSeq | NP_200008.1 | 0 | 1 | 581 | 1 | 585 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
| RefSeq | NP_567032.1 | 0 | 1 | 582 | 1 | 577 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3gdp_B | 0 | 30 | 574 | 11 | 519 | B Chain B, Structure Of A Cellulose Synthase - Cellulose Translocation Intermediate |
| PDB | 3gdp_A | 0 | 30 | 574 | 11 | 519 | B Chain B, Structure Of A Cellulose Synthase - Cellulose Translocation Intermediate |
| PDB | 3gdn_B | 0 | 30 | 574 | 11 | 519 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
| PDB | 3gdn_A | 0 | 30 | 574 | 11 | 519 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
| PDB | 1ju2_B | 0 | 30 | 574 | 11 | 519 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| cutin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
| cutin biosynthesis | RXN-9802 | EC-1.1.1 | 16-hydroxypalmitate dehydrogenase |
| suberin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
