| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra028316 |
| Family | AA6 |
| Protein Properties | Length: 229 Molecular Weight: 25133.7 Isoelectric Point: 4.2874 |
| Chromosome | Chromosome/Scaffold: 01 Start: 18627084 End: 18629690 |
| Description | flavodoxin-like quinone reductase 1 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA6 | 109 | 183 | 9e-25 |
| EVNGEKAIGQVPEPLPEEALSKMSTPPKSESPIITPNDLAEADGFVFGFPTRYGMMAAQFKVFLHATGGLQRTQS | |||
| Full Sequence |
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| Protein Sequence Length: 229 Download |
| MKNPPERYPI DENELRESEN RIVDGEINAL IPYYCFEIIE EEMIGELFHL TSICDSENNC 60 GCINIDEGVP VIGMGVAVLL VIIEKGLTYQ EIAKIPLGEG SMRHGQVLEV NGEKAIGQVP 120 EPLPEEALSK MSTPPKSESP IITPNDLAEA DGFVFGFPTR YGMMAAQFKV FLHATGGLQR 180 TQSRGPLKDQ SAHVYIICDG GNIEGFATKM TEPQPKYSTT EKQVLDML* 240 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK04196 | PRK04196 | 4.0e-5 | 80 | 121 | 44 | + V-type ATP synthase subunit B; Provisional | ||
| COG0655 | WrbA | 5.0e-7 | 147 | 204 | 60 | + Multimeric flavodoxin WrbA [General function prediction only] | ||
| TIGR01040 | V-ATPase_V1_B | 2.0e-8 | 75 | 121 | 49 | + V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase [Transport and binding proteins, Cations and iron carrying compounds]. | ||
| TIGR01755 | flav_wrbA | 2.0e-17 | 109 | 178 | 71 | + NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected [Energy metabolism, Electron transport]. | ||
| PRK03767 | PRK03767 | 9.0e-19 | 109 | 178 | 71 | + NAD(P)H:quinone oxidoreductase; Provisional | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAO12869.1 | 3e-29 | 118 | 182 | 2 | 66 | putative quinone reductase [Vitis vinifera] |
| RefSeq | NP_194457.2 | 1e-28 | 109 | 182 | 29 | 103 | quinone reductase family protein [Arabidopsis thaliana] |
| RefSeq | NP_200261.1 | 2e-30 | 113 | 183 | 34 | 104 | FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1); FMN binding / oxidoreductase, acting on NADH or NADPH, quinone or similar compound as acceptor [Arabidopsis thaliana] |
| RefSeq | XP_002283286.1 | 9e-30 | 113 | 182 | 34 | 103 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002534445.1 | 7e-29 | 113 | 182 | 34 | 103 | Minor allergen Alt a, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3b6m_B | 0.000000002 | 109 | 195 | 28 | 111 | A Chain A, Structure Of Glycogenin Truncated At Residue 270 In A Complex With Udp |
| PDB | 3b6m_A | 0.000000002 | 109 | 195 | 28 | 111 | A Chain A, Structure Of Glycogenin Truncated At Residue 270 In A Complex With Udp |
| PDB | 3b6k_B | 0.000000002 | 109 | 195 | 28 | 111 | A Chain A, Structure Of Glycogenin Truncated At Residue 270 In A Complex With Udp |
| PDB | 3b6k_A | 0.000000002 | 109 | 195 | 28 | 111 | A Chain A, Structure Of Glycogenin Truncated At Residue 270 In A Complex With Udp |
| PDB | 3b6j_B | 0.000000002 | 109 | 195 | 28 | 111 | A Chain A, Structure Of Glycogenin Truncated At Residue 270 In A Complex With Udp |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EV535564 | 129 | 90 | 172 | 8.40779e-45 |
| EV535564 | 33 | 42 | 74 | 8.40779e-45 |
| EV535564 | 13 | 171 | 183 | 8.40779e-45 |
| EV535564 | 17 | 75 | 91 | 8.40779e-45 |
| EV540213 | 144 | 75 | 172 | 6e-37 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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