y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra028358 |
Family | CE8 |
Protein Properties | Length: 337 Molecular Weight: 37443.8 Isoelectric Point: 9.2563 |
Chromosome | Chromosome/Scaffold: 01 Start: 18228678 End: 18230028 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 35 | 324 | 0 |
VFVDQSGNGNFTKIQKAIDSVPANNRNWFFINVAAGLYKEKIKIPYDKPFIVIVGAGKRKTRIEWDDHYSVAQSPTFATIADNTVVKSLTFVNTYNFPNN GKVNKNPRTPAVAALIDGDKCAFYSVGFAGIQDTLWDSDGRHLFHRCTIQGAVDFIFGNGQSIYKKCVIQVLGATLEPGLAGYITAQGRTNPYDANGFLF MDSLVHGTGMAYLGRPWRSYARVIFYNTNLTNVVVPEGWDAWNLVGHESQLTYAEVGCFGSGSSTTRRVSWVKKLNGPMVESLSSLNFIN |
Full Sequence |
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Protein Sequence Length: 337 Download |
MGTHRIFIAF VTLFCCFCLP HLIEAKRYGV YRQQVFVDQS GNGNFTKIQK AIDSVPANNR 60 NWFFINVAAG LYKEKIKIPY DKPFIVIVGA GKRKTRIEWD DHYSVAQSPT FATIADNTVV 120 KSLTFVNTYN FPNNGKVNKN PRTPAVAALI DGDKCAFYSV GFAGIQDTLW DSDGRHLFHR 180 CTIQGAVDFI FGNGQSIYKK CVIQVLGATL EPGLAGYITA QGRTNPYDAN GFLFMDSLVH 240 GTGMAYLGRP WRSYARVIFY NTNLTNVVVP EGWDAWNLVG HESQLTYAEV GCFGSGSSTT 300 RRVSWVKKLN GPMVESLSSL NFINNGGWVQ DLPIRI* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02682 | PLN02682 | 1.0e-75 | 40 | 330 | 304 | + pectinesterase family protein | ||
PLN02480 | PLN02480 | 1.0e-76 | 19 | 329 | 312 | + Probable pectinesterase | ||
PLN02432 | PLN02432 | 2.0e-82 | 37 | 330 | 294 | + putative pectinesterase | ||
PLN02176 | PLN02176 | 3.0e-98 | 35 | 335 | 302 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 0 | 1 | 334 | 334 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB01354.1 | 0 | 1 | 334 | 1 | 329 | pectin methylesterase-like protein [Arabidopsis thaliana] |
RefSeq | NP_189055.1 | 0 | 1 | 334 | 1 | 333 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | NP_197400.1 | 0 | 1 | 336 | 1 | 330 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002323773.1 | 0 | 35 | 334 | 1 | 289 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518106.1 | 0 | 35 | 334 | 48 | 336 | Pectinesterase U1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 4e-37 | 35 | 330 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 4e-28 | 37 | 305 | 7 | 277 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 2e-17 | 44 | 284 | 43 | 312 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 3e-16 | 30 | 274 | 3 | 280 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 3e-16 | 30 | 274 | 3 | 280 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |