| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra028492 |
| Family | GT47 |
| Protein Properties | Length: 476 Molecular Weight: 55393.7 Isoelectric Point: 7.9266 |
| Chromosome | Chromosome/Scaffold: 02 Start: 651655 End: 653082 |
| Description | Exostosin family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT47 | 90 | 417 | 0 |
| SCEGKGVYVYEIPSKFNRDLLVDCIDMVPWTNMCKFFKNDGFGEAIENLGQGWFRTHQYALEPILHSRVLKHPCRVYKESQAKLFYVPFYGGFDVLRWHF KNVSNDVKDRLGIEVLKWLGSKESWKRNAGKDHVFVLGKISWDFRRNKDSWGSSFLDLQDMQNPTRLLIERHPWEVNDIAIPHPTYFHPKTDYDITSWQD KMTSKPRRNLISFAGGARPGDPSSIRSTLIDQCTLFSDQCRLLNCSDGSCDKPENVINLFQDSEFCLQPRGDSPTRKSVFDSLISGCIPVIFDPYTAYYQ YAWHLPEDHKRYSVYINQEDVKEKRVNV | |||
| Full Sequence |
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| Protein Sequence Length: 476 Download |
| MSTNLTTKSD VLSKDEEIGY EVSGDDTKRY GVNVISGEDH KTKKESVEEQ DNYIKPKNEE 60 EGYALRAVTK YLKVQRSWIS TRNKIEKSRS CEGKGVYVYE IPSKFNRDLL VDCIDMVPWT 120 NMCKFFKNDG FGEAIENLGQ GWFRTHQYAL EPILHSRVLK HPCRVYKESQ AKLFYVPFYG 180 GFDVLRWHFK NVSNDVKDRL GIEVLKWLGS KESWKRNAGK DHVFVLGKIS WDFRRNKDSW 240 GSSFLDLQDM QNPTRLLIER HPWEVNDIAI PHPTYFHPKT DYDITSWQDK MTSKPRRNLI 300 SFAGGARPGD PSSIRSTLID QCTLFSDQCR LLNCSDGSCD KPENVINLFQ DSEFCLQPRG 360 DSPTRKSVFD SLISGCIPVI FDPYTAYYQY AWHLPEDHKR YSVYINQEDV KEKRVNVVEK 420 LMTKTPRQRE DMRSYIVHHL LPGLVYGDSN AKFDRFRDAF DITFDNLIEK INKLV* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam03016 | Exostosin | 3.0e-69 | 90 | 422 | 348 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016020 | membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_176534.2 | 0 | 45 | 475 | 233 | 664 | catalytic [Arabidopsis thaliana] |
| RefSeq | NP_198941.1 | 0 | 5 | 475 | 82 | 560 | exostosin family protein [Arabidopsis thaliana] |
| RefSeq | XP_002269913.1 | 0 | 51 | 474 | 116 | 537 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002299537.1 | 0 | 33 | 474 | 133 | 572 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509789.1 | 0 | 27 | 474 | 124 | 566 | Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FC346433 | 252 | 174 | 421 | 0 |
| CF668912 | 279 | 201 | 474 | 0 |
| FC451292 | 241 | 173 | 409 | 0 |
| DY290373 | 346 | 128 | 463 | 0 |
| FC340904 | 244 | 90 | 322 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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