| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra028511 |
| Family | GH28 |
| Protein Properties | Length: 448 Molecular Weight: 48132.6 Isoelectric Point: 7.4186 |
| Chromosome | Chromosome/Scaffold: 02 Start: 802923 End: 804614 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 76 | 418 | 0 |
| SVGTLLYVPRGVYLTQSFNLTSHMTLYLAHGAVIKALQDTEKWPLIDPLPSYGRGRERPGQRYISFIHGDGLTDVVITGKNGTIDGAGEPWWNMWRHGTL KFTRPGLVEFKNSTDILISHVVLQNSPFWTLHPVYCSGVVVHHVTILAPTDSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYNRPSRDI TIRRITGSSPFAGIAIGSETSGGIQNVTVENITLYNSGIGVHIKTNIGRGGSIQGITVSGVHLEKVRTGIKISGDTGDHPDDKFNVSALPVVRGITIKNV WGIKVERAGMVQGLKDAPFTNLCFSNVTFTGTKGSPIWKCSDV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 448 Download |
| MGISRLPISV FVFFLLSAHH HLSLGDPITC SGIVPMKHRS QMLSISDFGA VGDGTTLNTN 60 AFNAAIDRIR NAKNVSVGTL LYVPRGVYLT QSFNLTSHMT LYLAHGAVIK ALQDTEKWPL 120 IDPLPSYGRG RERPGQRYIS FIHGDGLTDV VITGKNGTID GAGEPWWNMW RHGTLKFTRP 180 GLVEFKNSTD ILISHVVLQN SPFWTLHPVY CSGVVVHHVT ILAPTDSPNT DGIDPDSSSN 240 VCIEDSYIST GDDLVAVKSG WDEYGIAYNR PSRDITIRRI TGSSPFAGIA IGSETSGGIQ 300 NVTVENITLY NSGIGVHIKT NIGRGGSIQG ITVSGVHLEK VRTGIKISGD TGDHPDDKFN 360 VSALPVVRGI TIKNVWGIKV ERAGMVQGLK DAPFTNLCFS NVTFTGTKGS PIWKCSDVVG 420 AAEKVNPTAC PELTSTSQQG GYCENQA* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 5.0e-21 | 41 | 347 | 325 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 3.0e-25 | 40 | 358 | 332 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 2.0e-26 | 43 | 410 | 378 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-31 | 141 | 418 | 285 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 3.0e-54 | 40 | 355 | 339 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACC91250.1 | 0 | 5 | 442 | 3 | 437 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
| EMBL | CBI34471.1 | 0 | 3 | 440 | 1 | 441 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_194113.1 | 0 | 5 | 436 | 3 | 434 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_199002.1 | 0 | 1 | 447 | 1 | 449 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002509949.1 | 0 | 29 | 440 | 28 | 440 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 3e-39 | 43 | 408 | 28 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 3e-39 | 43 | 408 | 28 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 3e-39 | 43 | 408 | 28 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 3e-39 | 43 | 408 | 28 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 2e-19 | 87 | 375 | 51 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
