| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra028549 |
| Family | PL1 |
| Protein Properties | Length: 491 Molecular Weight: 54422.5 Isoelectric Point: 6.6476 |
| Chromosome | Chromosome/Scaffold: 02 Start: 1023914 End: 1027184 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 143 | 342 | 0 |
| IVFPSNMMIKLKQELIFNSYKTLDGRGANVHIVGGGCITLQYVSNVIIHNIHIHHCYQSGNTNVRSSPTHYGFRTKSDGDGISIFGSKDIWIDHCSLSRC KDGLIDAVMGSTGITISNNFFSHHNEVMLLGHSDHYEPDSGMQVTIAFNHFGEKLIQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRFTAP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 491 Download |
| MMLQRSCIVL FFSLSLFVPY MSLAMLNKTL LLLPHPDPEL VAHDVHRRVN ASLSRRQAMD 60 TTDQTGSNPC FTGNPIDDCW KCDPNWPNNR QGLADCGIGF GQYALGGKGG RFYFVTDSSD 120 DDAVEPKPGT LRYGVIQVEP LWIVFPSNMM IKLKQELIFN SYKTLDGRGA NVHIVGGGCI 180 TLQYVSNVII HNIHIHHCYQ SGNTNVRSSP THYGFRTKSD GDGISIFGSK DIWIDHCSLS 240 RCKDGLIDAV MGSTGITISN NFFSHHNEVM LLGHSDHYEP DSGMQVTIAF NHFGEKLIQR 300 MPRCRRGYIH VVNNDFTQWE MYAIGGSGNP TINSQGNRFT APSNPFAKEV TKRVETPDGE 360 WKGWNWRSEG DILVNGAFFV ASGEGAEMRY EKAYSIEPKS ASFIDQITFH SGVLGVGGRN 420 NNLGMWTTTG SEGNGGLDSY NDYTDEMSGT GSTNRLSFSV IVLAFMLNLL SYLVIFISSP 480 QMFSFQPKCL * 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-22 | 161 | 354 | 206 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 3.0e-64 | 154 | 339 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 6.0e-74 | 148 | 343 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM61400.1 | 0 | 2 | 483 | 1 | 480 | pectate lyase-like protein [Arabidopsis thaliana] |
| EMBL | CAB64222.1 | 0 | 21 | 483 | 1 | 461 | pectate lyase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_566979.1 | 0 | 1 | 483 | 1 | 481 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002265853.1 | 0 | 2 | 431 | 115 | 540 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002519460.1 | 0 | 23 | 478 | 21 | 476 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 74 | 414 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 74 | 414 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 6e-20 | 105 | 339 | 22 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_B | 0.00000000000003 | 152 | 412 | 78 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_A | 0.00000000000003 | 152 | 412 | 78 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
