| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra028617 |
| Family | CE8 |
| Protein Properties | Length: 548 Molecular Weight: 60165 Isoelectric Point: 7.5745 |
| Chromosome | Chromosome/Scaffold: 02 Start: 1316054 End: 1318091 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CE8 | 236 | 538 | 0 |
| DVTVCKTGKCRYKTVQEAVNAAPDNNGVRKFVIKISEGVYEETVRVPFEKKNVVFIGDGVGKTVITGSLNARMPGMSTFKSATVGVMGDGFMARDITFQN AAGPEGHQAVAFRSDSDFSLLENCEFLGNQDTLYAHGLRQFYKKCRIQGNIDFIFGNSASVFQDCEILIAPRQVNPEKGEKNAVTAHGRIDPTQSTGFVF VNCLINGTEEYMKLYKANPKVHINFLGRPWKEFSRTVFIGSNMEALISPDGWSPWGGDFALQTLYYGEFKNTGLGSDRSRRVSWSSEIPEEHVHAYSVAN FIQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 548 Download |
| MSSTLILLFS LFLLAFPSTS SRPHHHHHNS PPLNPSSSTA SQIRLACNAT RYPDQCLSSL 60 SQPGLVPPDP TPPQIIHSAI SVSFKNLETA QSKLKSILDA SVGNLNRTNA ANTCLELLSY 120 SKRRTLSADH ALTRGRIKDA RAWMSAALVY QYDTWSALKY VNDTTQVGET MSFLDGGLLH 180 VTSNALGMMV SYDNFGDKLA SWTPPRTERD GFWEKTGPGM GSDPGTLGFP SGLKEDVTVC 240 KTGKCRYKTV QEAVNAAPDN NGVRKFVIKI SEGVYEETVR VPFEKKNVVF IGDGVGKTVI 300 TGSLNARMPG MSTFKSATVG VMGDGFMARD ITFQNAAGPE GHQAVAFRSD SDFSLLENCE 360 FLGNQDTLYA HGLRQFYKKC RIQGNIDFIF GNSASVFQDC EILIAPRQVN PEKGEKNAVT 420 AHGRIDPTQS TGFVFVNCLI NGTEEYMKLY KANPKVHINF LGRPWKEFSR TVFIGSNMEA 480 LISPDGWSPW GGDFALQTLY YGEFKNTGLG SDRSRRVSWS SEIPEEHVHA YSVANFIQAD 540 EWPLMSG* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02468 | PLN02468 | 9.0e-105 | 43 | 542 | 510 | + putative pectinesterase/pectinesterase inhibitor | ||
| PLN02713 | PLN02713 | 2.0e-106 | 46 | 542 | 538 | + Probable pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 2.0e-112 | 114 | 542 | 440 | + pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 2.0e-161 | 236 | 540 | 308 | + Pectinesterase. | ||
| PLN02708 | PLN02708 | 0 | 42 | 542 | 504 | + Probable pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB09534.1 | 0 | 29 | 547 | 57 | 577 | pectin methylesterase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_196538.1 | 0 | 29 | 547 | 31 | 551 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_568991.2 | 0 | 20 | 542 | 61 | 597 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002275192.1 | 0 | 36 | 542 | 33 | 539 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002281640.1 | 0 | 8 | 542 | 1 | 550 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 231 | 542 | 3 | 307 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 236 | 547 | 4 | 308 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 6e-16 | 247 | 515 | 18 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 6e-16 | 247 | 515 | 18 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 6e-16 | 247 | 515 | 18 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
