| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra028698 |
| Family | CE8 |
| Protein Properties | Length: 362 Molecular Weight: 39991.8 Isoelectric Point: 9.3333 |
| Chromosome | Chromosome/Scaffold: 02 Start: 2502327 End: 2503769 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 67 | 350 | 0 |
| VTVNQKGGANFKSINEAIKSIPIGNKKRVIIKLAPGIYTEKVTVDVGRPFVTLLGQPGSQTVLTYHGTAAQYGTVESATLIIWSDYFMAANLIIKNTSPM PKPGSQGQALAMRINGDYAAFYTCSFYGFQDTLCDDKGNHFFKDCYIEGTYDFIFGRGASLYLNTKLHAVGDGLRVITAQSRQSNTEQNGYTFVHCKITG TGTGIYLGRSWMSHPKVIYAFTEMTSVVNPSGWRENFNRAYDKTVFYGEYKCFGPGSHQEKRVPYTQDVDQNEVRPFLTLGYIK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 362 Download |
| MGYISPSIVA FIVAFILPVV LATDTAPIPE VRAQIPQWFK TNVAPYSQRK GTLDPALDAA 60 EAARIIVTVN QKGGANFKSI NEAIKSIPIG NKKRVIIKLA PGIYTEKVTV DVGRPFVTLL 120 GQPGSQTVLT YHGTAAQYGT VESATLIIWS DYFMAANLII KNTSPMPKPG SQGQALAMRI 180 NGDYAAFYTC SFYGFQDTLC DDKGNHFFKD CYIEGTYDFI FGRGASLYLN TKLHAVGDGL 240 RVITAQSRQS NTEQNGYTFV HCKITGTGTG IYLGRSWMSH PKVIYAFTEM TSVVNPSGWR 300 ENFNRAYDKT VFYGEYKCFG PGSHQEKRVP YTQDVDQNEV RPFLTLGYIK GSKWLLPPPK 360 Y* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02304 | PLN02304 | 3.0e-86 | 66 | 357 | 303 | + probable pectinesterase | ||
| PLN02634 | PLN02634 | 4.0e-88 | 66 | 357 | 301 | + probable pectinesterase | ||
| PLN02432 | PLN02432 | 8.0e-94 | 65 | 355 | 291 | + putative pectinesterase | ||
| PLN02682 | PLN02682 | 7.0e-106 | 11 | 357 | 360 | + pectinesterase family protein | ||
| PLN02665 | PLN02665 | 0 | 1 | 361 | 363 | + pectinesterase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB87930.1 | 0 | 19 | 359 | 1 | 340 | pectin methyl-esterase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_177152.2 | 0 | 1 | 359 | 1 | 359 | PPME1; pectinesterase [Arabidopsis thaliana] |
| RefSeq | NP_196359.1 | 0 | 24 | 361 | 24 | 361 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_196360.1 | 0 | 24 | 361 | 24 | 361 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_568181.1 | 0 | 1 | 359 | 1 | 359 | pectinesterase family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 3e-37 | 67 | 355 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 1e-32 | 69 | 355 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 1e-20 | 57 | 286 | 26 | 276 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 1qjv_B | 2e-17 | 66 | 233 | 7 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 2e-17 | 66 | 233 | 7 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
